Gene detail

Gene detail information of Glyur000112s00012326

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT2G01420.1	Auxin efflux carrier family protein
NR	AAM55299.1	auxin efflux carrier protein [Medicago truncatula]
Swissprot	tr\|Q9S7Z8\|PIN3_ARATH	Auxin efflux carrier component 3
trEMBL	tr\|Q8GV75\|Q8GV75_MEDTR	Auxin efflux carrier protein {ECO:0000313\|EMBL:AAM55299.1}

Sequence

Transcript Sequence

>Glyur000112s00012326.1
AAGAAAACCCTCATCTCTATTAATAAAAATCATTGACATAATCCAATCCTCCATCTGCTATACACACCTATACCCTATATATACACACTATGCAACTTACACACACACTATATACAATTGCAAAATTCACTGGCATAAGCATTCTCACTCACCTCTGCTTTCTCTGACACTTCTCTCTGTCTAAAACCGTCATCTTCTCACAAACACACACAACAGAGCAGTACTACAGAGTAGTCACCAAACACGAAACACACACAGTTAACTAACGGTTTTCTTTCCCATTTCAATTNCCTTCCAACAAAGAACAACCCAGAAAAAAAAAATGATAACGTGGAAGGATCTATACACGGTTCTAACGGCAGTGGTCCCTCTGTATGTTGCGATGATCTTAGCGTACGGTTCGGTCCGGTGGTGGAAGATATTCTCACCGGACCAATGTTCGGGTATAAACCGTTTCGTTGCGGTATTCGCGGTTCCACTCCTCTCCTTCCATTTCATCTCCACCAACAACCCTTACCAGATGAACATGCGGTTCATCGCCGCTGACACGCTCCAGAAGATAATCATGCTCTTCGCACTCGCACTTTGGACAAACCTCAGCAAAAACGGCTCNCTGGAATGGATGATAACCATATTCTCCCTATCCACGCTCCCAAACACCCTCGTTATGGGTATTCCACTCTTAATAGCCATGTACGGTGACTATTCTGGAAGCCTCATGGTTCAGGTGGTGGTGCTCCAGTGTATCATATGGTACACCCTCCTCTTATTCCTCTTCGAGTACCGCGGCGCTAAGCTTCTTATCATGGAGCAGTTCCCTGAGACAGCTGCTTCAATTGTTTCATTCAAAGTCGATTCTGATGTTCTTTCTCTCGACGGCCGCGACTTTCTTGAGACAGACGCGGCCGTTGGGGACGACGGGAAGCTCCACGTCACGGTGAGGAAGTCGAACGCGTCGCGGAGGTCGTTCATGATGGCGACTCCNCGACCGTCGAACCTCACCGGAGCTGAGATTTATAGTCTCAGCTCCACGCCGAGAGGATCCAACTTCAACCATGCCGATTTCTACTCCATGATGGGGTATCAGCCGAGGCATTCCAATTTTGGACCCAACGATTTTCAATCCTCTCGTGGACCCACTCCCAGACCCTCCAATTTCGAAGAAACGTCAGCGGGTTCACCCAGATTCGGGTTTTACCCGGCACAGAATGTGCCCGTACCCGCTCCGTACCCACCACCCAACCCGGAATTCTCCTCCGCCACTAAACCAGTGAAAAATCAAAACCAAAACCATAACCAAAATTTGCAGCAGCAGCAGCAGATACAGCAGCAACAGGCTCCATTGCCGCTGAACAAGGCTTCTTCCCATGATGCTAAGGAGTTGCACATGTTTGTGTGGAGCTCGAGTGCCTCGCCGGTTTCCGAAACCGCCGGCCTCAATGTATTCCACGCTTCCGAGCAACCCGATCAGGGTGCTAAAGAGATCAGGATGGTGGTGCCTGATGAACATAATCAAAATGGGGAAACCAACAACAAAGCTGGTCCAGAAGGGGAACTTGGTGGGGNAGAGTTCAAGTTCAGTGGAGGAAAGGGAGCAGAACAGGGAGAGGAAGGGAGAGATCAGAAAGAAGGGCCCAATGGGCTGAATAAACTGGGCTCCAGTTCCACGGCAGAGCTCCACCCGAAAGCTACCGGAGCTGCCGATTCCGGCGCCAGCAAACACATGCCTCCGGCGAGTGTCATGACCCGTCTCATACTCATCATGGTTTGGAGGAAGCTTATCCGCAATCCCAACACTTACTCGAGCCTCATAGGTGTCATTTGGTCCCTCGTTGCCTTTAGGTGGGATGCGCACATGCCAAAAATAATAGAGAAATCAATTTCCATACTGTCCGATGCTGGTCTTGGAATGGCTATGTTCAGCTTAGGTCTGTTTATGGCTCTTCAACCCAAGATAATTGCATGTGGGAATTCAGTTGCCACATTTGCCATGGCTGTGAGGTTCCTTACTGGCCCGGCAGTTATGGCGGCAGCTTCTATCGCCGTTGGCCTCCGTGGTACCCTCCTACATGTAGCTATTGTTCAGGCTGCACTTCCACAAGGGATTGTTCCATTTGTGTTTGCAAAGGAGTACAACGTCCATCCAGCAATTCTTAGTACAGCGGTTATATTTGGGATGTTGATAGCCCTTCCCATTACGCTAGTCTACTACATACTCCTTGGTTTGTAAAACCCCTCTTCCGCAGTAACCAACATATATACAAGGAAGAATTTAGCAAATGATTTCGGCTAGCCTTTGGTACTTTTGAAGCTAGTAAACATGCATGGACAGAGTATATTCTATTATTCACAAGGAGGAGGATTTTTCGCTTCAAGAGGGGGGAAAAATATCACTAACTAGTAATTTCACCAACAGATGTTGTCATTCCAAGTTTCCAAAAGTTTTGGCAACTTGAGAAAAATTTGACAGATTAGCGNGGCCCCATAATTCTAACGTCTCTCTATTGAAAATACAAGGTCATATGGAATGGTGNTGTAGCTTTGAAGGACCTCAAAGAGGAAGAGCAAGTAACAGAGTGTATGGGAGAGACATAACACAGGAAAACAGGGGAAAGCTAGCGTTAGAGCAGAGTCAAATGATATCTAGAAATGGTTCCCTCTCTGTCAGCATTTGTAAATTTTATAAGGAAAAATCTGTTGTAGGTCATCAAGTTCAAAAGATGGTTTATTGCGTGCTTTGAAATTCACTAGAGATTTGATCCATTGAGAGAGATAATAGACTGCCTCAAACCTACATGTTTGAGCTATCTCAAATAAATTTCTGAATACTCTATTAGTAATTGAGTAGAGAAAATGAAATTGAAAAAGAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00112	173719	178168	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0055085 transmembrane transport

cellular_component
GO:0016021 integral component of membrane

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000112s00012326.1	PF03547.13	Mem_trans	9	630	1.10E-187

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.255
SRR1783600	control	1.280
SRR1783602	moderate drought stress	1.907
SRR1811619	moderate drought stress	1.899

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.651
DRR006520	Root Summer glycyrrhizin high producing strain	1.643
DRR006521	Root Winter glycyrrhizin high producing strain	0.038
DRR006522	Root Winter glycyrrhizin high producing strain	0.038
DRR006523	Root Summer glycyrrhizin low producing strain	3.677
DRR006524	Root Summer glycyrrhizin low producing strain	3.759
DRR006525	Leaf Summer glycyrrhizin high producing strain	21.874
DRR006526	Leaf Summer glycyrrhizin high producing strain	21.788

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	4.599
SRR2868004	Drought Stress (root)	5.901
SRR2967015	Control (root)	6.860

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	16.195
SRR9715740	Leaf	24.481
SRR9715741	Leaf	7.631
SRR9715739	Root	0.780
SRR9715742	Root	6.160
SRR9715743	Root	4.450

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	7.103
SRR8749028	MeJA induced 9h	6.777
SRR8749029	MeJA induced 9h	1.704
SRR8749030	Uninduced	0.177
SRR8749031	Uninduced	0.239
SRR8749032	Uninduced	0.059

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	5.150
SRR8400027	Control - Root	7.896