Gene detail

Gene detail information of Glyur000112s00012323

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G30110.2	4.00E-78	nudix hydrolase homolog 25
NR	XP_004498300.1	5.47E-118	PREDICTED: nudix hydrolase 25-like [Cicer arietinum]
COG	YP_002299580.1	2.00E-42	nudix family hydrolase, putative [Rhodospirillum centenum SW]
Swissprot	tr\|Q9C6Z2\|NUD25_ARATH	9.00E-99	Nudix hydrolase 25
trEMBL	tr\|G7I948\|G7I948_MEDTR	1.00E-117	Nudix hydrolase-like protein {ECO:0000313\|EMBL:AES59868.1}

Sequence

Transcript Sequence

>Glyur000112s00012323.1
CCCTCACTTATTCCCAAACACCAAATCCTCAACGCGCACAGCACACAATATTACATTACAGCATAGCATCCACTTGACTTGTTGCTTAATTTCCCACTCTCTCTCTCTCCGTCCTTTCCCATCTGACTTCTCAAGATTCTCTCTTCTCACACCAATAATCCCATCTCATCCTCATCTCAGCCCCAACACTCCCACACTCTTCCCCTCTCCAACTTCAAATAAAGCTTATAAATATTCTCTGTTATTATTAGCCTTTTTTTTCTTCTTCTATTCAACCACTCATCATCCAACCCAACAAACAACTCATGGAGGGTCTTCCCCAAGGTTACCGTCCCAACGTTGGTGTCTGTCTCATCAACTCTGATGATCAGATATTTGTGGCTTCTAGATTGAATGTTCCAGGAGCATGGCAAATGCCTCAGGGNGGAATTGAAGATGGTGAAGAGCCCAAATATGCTGCCATTCGGGAACTTCGAGAAGAAACTGGAATAGTATCTGCTGAGATTGTCACCGAGGTTCATAAATGGTTGACATATGACTTCCCTCCTGCTGTGAAGGCTAAAGTCAATCGTCTTTGGGGAGGTGAATGGCATGGACAAGCACAAAAATGGTTTCTCATGAGACTAACAAAAGATGACAGCGAAATCAACTTGGCTACCGGTGAAGCAGACCCAGAATTTGCAGAATGGAAATGGGCAAGCCCTGAAGAAGTTATTGAGCAGGCAGTGGACTACAAGAGACCAACCTATGAAGAAGTTATAAGAACATTCAAGCCTTACTTTCAAGGGAATGCAGTATCTGCAAAATGTAAATCGACAAAGTGGTGAATGTTATTTATGAGTGTATGCATTAATGTAGTTCANTTCCATTTTCTTTTTCTAATTTCACTTACTTACTGAGGTTGGATTAGCACTCAGCTATTTTGTAAATGGATGATAGTTAGAACTTCTCCCATCAGGTACTTGCCTTCTTCTTGTAATAATAAGATGTGTGCAAATGCCCAATTTTCTTTTTCTAAACCTCTTGCTGCGAGGATGATTGTGAGTGTGTATAGAACTGTTCAATNAAGTTGGAAGCAACATGCTGCAGAATAGTGATCATGTTAGTGCCTAAGTACAAGGTCAAGGAGCAATTTTTATAAGAAAGGCTGAAAACTGAAGACTGAGGGCAATTTTTATAGTGATCACGACTTAGTGTCTAATTACAAGGAGCAATAGTAATCATGANTTTGCAGTACCTTTGTATCTCAAGAGAACATTA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00112	144018	147439	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0016787 hydrolase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000112s00012323.1	PF00293.23	NUDIX	8	146	3.50E-25

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	11.097
SRR1783600	control	11.004
SRR1783602	moderate drought stress	9.687
SRR1811619	moderate drought stress	9.557

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	31.557
DRR006520	Root Summer glycyrrhizin high producing strain	31.317
DRR006521	Root Winter glycyrrhizin high producing strain	20.150
DRR006522	Root Winter glycyrrhizin high producing strain	19.616
DRR006523	Root Summer glycyrrhizin low producing strain	91.358
DRR006524	Root Summer glycyrrhizin low producing strain	91.159
DRR006525	Leaf Summer glycyrrhizin high producing strain	24.203
DRR006526	Leaf Summer glycyrrhizin high producing strain	24.041

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	55.878
SRR2868004	Drought Stress (root)	62.270
SRR2967015	Control (root)	76.786

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	100.427
SRR9715740	Leaf	85.699
SRR9715741	Leaf	131.885
SRR9715739	Root	28.903
SRR9715742	Root	47.899
SRR9715743	Root	42.217

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	273.583
SRR8749028	MeJA induced 9h	250.501
SRR8749029	MeJA induced 9h	212.285
SRR8749030	Uninduced	58.738
SRR8749031	Uninduced	10.811
SRR8749032	Uninduced	25.245

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	42.715
SRR8400027	Control - Root	49.905