Gene detail

Gene detail information of Glyur000112s00012318

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G51030.1	2.00E-114	NAD(P)-binding Rossmann-fold superfamily protein
NR	XP_003533937.1	0	PREDICTED: (+)-neomenthol dehydrogenase-like [Glycine max]
COG	YP_007148857.1	1.00E-53	short-chain alcohol dehydrogenase [Cylindrospermum stagnale PCC 7417]
Swissprot	tr\|Q9M2E2\|SDR1_ARATH	8.00E-56	(+)-neomenthol dehydrogenase
trEMBL	tr\|I1L2S0\|I1L2S0_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA09G20260.1}

Sequence

Transcript Sequence

>Glyur000112s00012318.1
GTGACTTTGATCAAAATCAATTTTTGTTATTAAATTACCAAGCTCNGATACCTTTTCAATCTCAACAGTGATTCCCCATGCCGCCACTAATCTCAANAGTGAAACTGGAGTTGGACCCGGCTGCAGCAAAGTGACCAAAGCCGCGAAACAAAACAGAAAGAAAGAGGGAGGAGAGATGGGTAAGAAGGAAAAGGCAAAGGAACGAAGAGAACAGAGACTGCAAGAGATACGGCTTCTTAGGACCATTCCCTATTCTGATCACCAAAGGTGGTGGTCCAAGGAAACTATTGCNGTGGTTACTGGTGGAAACAGAGGAATTGGGTTTGAGATTTGTAGACAACTTGCTGCTCATGGATTGACTGTTATATTGACATCAAGAGATGCTAGTNCTGGTGCTGAATCAATTAAGGTTTTGCAAGAAGATGGCCTGGACGTGGTTTATCATCAACTTGACATAGTAAATCATNCATCCATCAACCAGTTTGTTGAATGGTTGCAGGAAAATTATGGTGGCTTAGATATTCTGGTAAACAATGCTGGTGTTAATTTCAATCTTGGGTCTGATAACTCTGTTGAAAATGCTCGCAAGGTTATCGAAACAAATTATTATGGCATCAAGAATATGACTGAAGCCATTATTCCATTGATGAAACCATCCCTTGTTGGTGCTCNAATTGTAAATGTAAGCTCGCGTCTAGGTCGACTAAATGGAAGACGGAATAGAATCAGCAATGTAGACTTGAGGGAGCAACTGAGTAATGTGGTGTCCCTTTCAGAGGAACTGATTAGCAGGACTCTATCTGCTTTCTTACANCAAGTAGAAGATGGAACTTGGACATCAGGTGGGTGGCCTCAAACATACACTGACTACTCGGTGTCAAAACTCGCAGTTAATGCTTATACAAGGCTTATGGCAAGGAAGCTTTCTGAGAGACCGGACGGTCAGAAGATTTATATTAACTGCTATTGCCCGGGTTGGGTGAAGACGGCTTTAACAGGTTATGCAGGGAACAATACTGTTGAGGAAGGAGCTGATACTGGAGTATGGCTTGCCCTTCTGCATGACCAAACNATTATGGGAAAGTTTTTTGCTGAGAGACGGGAAATTAACTTTTAAGCCTGTTTTCTGTTTGGATTGGAAGAATTGAGTAGCAAATAACTTCTATAAATTTGAAAGAGATATGGAAATCTGTCNGTTGGCATTAGTTTGCTGGCAGGTTTGAAGTTTCTTATTAGTGTACCATGTAGCTTTCAGTGGTAAGCTAATTCTTTTTTGTTTGATGCTTCTGAAGTTTTAATAGCAATTTTACTATGGGAAACCCAGATGGGAATGGGGGTAAAGCATGAAATGAACAC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00112	125080	128527	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0008152 metabolic process

molecular_function
GO:0016491 oxidoreductase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000112s00012318.1	PF00106.20	adh_short	38	177	8.50E-24

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	5.229
SRR1783600	control	5.337
SRR1783602	moderate drought stress	6.852
SRR1811619	moderate drought stress	6.621

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	11.685
DRR006520	Root Summer glycyrrhizin high producing strain	11.167
DRR006521	Root Winter glycyrrhizin high producing strain	12.693
DRR006522	Root Winter glycyrrhizin high producing strain	11.920
DRR006523	Root Summer glycyrrhizin low producing strain	12.352
DRR006524	Root Summer glycyrrhizin low producing strain	12.138
DRR006525	Leaf Summer glycyrrhizin high producing strain	4.813
DRR006526	Leaf Summer glycyrrhizin high producing strain	5.184

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	21.567
SRR2868004	Drought Stress (root)	20.079
SRR2967015	Control (root)	15.368

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	11.123
SRR9715740	Leaf	11.209
SRR9715741	Leaf	12.165
SRR9715739	Root	6.528
SRR9715742	Root	11.486
SRR9715743	Root	9.088

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	14.908
SRR8749028	MeJA induced 9h	9.093
SRR8749029	MeJA induced 9h	9.559
SRR8749030	Uninduced	17.490
SRR8749031	Uninduced	11.335
SRR8749032	Uninduced	6.749

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	21.169
SRR8400027	Control - Root	21.423