Gene detail information of Glyur000112s00012316.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G01480.1 | 0 | O-fucosyltransferase family protein |
| NR | XP_004498293.1 | 0 | PREDICTED: uncharacterized protein At1g04910-like isoform X1 [Cicer arietinum] |
| Swissprot | tr|Q8W486|Y1491_ARATH | 9.00E-78 | Uncharacterized protein At1g04910 |
| trEMBL | tr|V7CLI8|V7CLI8_PHAVU | 0 | Uncharacterized protein {ECO:0000313|EMBL:ESW29746.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00112 | 113052 | 122975 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GTnc |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000112s00012316.1 | PF10250.4 | O-FucT | 159 | 472 | 5.60E-85 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.985 |
| SRR1783600 | control | 3.873 |
| SRR1783602 | moderate drought stress | 4.382 |
| SRR1811619 | moderate drought stress | 4.249 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 3.962 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 3.732 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 3.533 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 3.228 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 4.354 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 4.608 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.397 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.338 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 8.997 |
| SRR2868004 | Drought Stress (root) | 8.486 |
| SRR2967015 | Control (root) | 9.555 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 5.653 |
| SRR9715740 | Leaf | 3.855 |
| SRR9715741 | Leaf | 5.389 |
| SRR9715739 | Root | 2.037 |
| SRR9715742 | Root | 6.029 |
| SRR9715743 | Root | 4.181 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 6.474 |
| SRR8749028 | MeJA induced 9h | 5.751 |
| SRR8749029 | MeJA induced 9h | 3.293 |
| SRR8749030 | Uninduced | 2.955 |
| SRR8749031 | Uninduced | 3.272 |
| SRR8749032 | Uninduced | 2.274 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 7.164 |
| SRR8400027 | Control - Root | 6.757 |