Gene detail information of Glyur000112s00012300 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G23180.1 | 0 | ARM repeat superfamily protein |
| NR | XP_006583708.1 | 0 | PREDICTED: uncharacterized protein LOC100810447 [Glycine max] |
| Swissprot | tr|Q9SNC6|PUB13_ARATH | 5.00E-06 | U-box domain-containing protein 13 |
| trEMBL | tr|K7L267|K7L267_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA07G23736.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00112 | 18959 | 25211 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000112s00012300.1 | PF00514.18 | Arm | 244 | 285 | 5.30E-06 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 10.095 |
| SRR1783600 | control | 9.990 |
| SRR1783602 | moderate drought stress | 11.545 |
| SRR1811619 | moderate drought stress | 11.563 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 7.280 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 7.565 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 2.764 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 2.754 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 7.774 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 7.837 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 10.533 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 10.277 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 6.960 |
| SRR2868004 | Drought Stress (root) | 8.376 |
| SRR2967015 | Control (root) | 7.790 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 11.084 |
| SRR9715740 | Leaf | 20.518 |
| SRR9715741 | Leaf | 12.249 |
| SRR9715739 | Root | 1.005 |
| SRR9715742 | Root | 6.232 |
| SRR9715743 | Root | 5.398 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 4.941 |
| SRR8749028 | MeJA induced 9h | 2.815 |
| SRR8749029 | MeJA induced 9h | 2.784 |
| SRR8749030 | Uninduced | 2.653 |
| SRR8749031 | Uninduced | 1.545 |
| SRR8749032 | Uninduced | 1.256 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 11.187 |
| SRR8400027 | Control - Root | 10.803 |