Gene detail

Gene detail information of Glyur000112s00012299

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT2G01600.1	ENTH/ANTH/VHS superfamily protein
NR	KHN03156.1	Putative clathrin assembly protein [Glycine soja]
Swissprot	tr\|Q8LBH2\|CAP8_ARATH	Putative clathrin assembly protein At2g01600
trEMBL	tr\|K7LDE5\|K7LDE5_SOYBN	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA09G21570.2}

Sequence

Transcript Sequence

>Glyur000112s00012299.1
CGCAGTGGCACAGCTAAGCAGCAGCCGCCAAAACGCTTTGATCAAACAAACAAACTCTCATTTTTTCCGGAGACGAAGAAGAAACTTTCTTTGATCTTCTTCAAAACTTGAAATTGAAACTGAAACTTCTCTCTTCTCACTTGTGCTTCGATCCCATTCAATTTCATTGATCATCCCACTCGGCTTGAAGAAGAGAGAAAGAGAGAGAGAGATGGGTAGTACTAGCACCCTTCAGGGTTGGAGAAAAGCGTATGGCGCCCTTAAAGACACCACCAAAGTCGGTCTCGCCCATGTCAACAGCGATTACGCGGAATTGGACGTTGCCATAGTCAAAGCCACCAACCACGTCGAGTCTCCTCCCAAAGACAGACACCTTCGAAAAATCATGTTTGCCACTACTGCTGTACGACCAAGAGCTGATGTTGCTTACTGCATCCATTACCTTTCCCGTCGATTGGCCAAGACGCGAAACTGGACGGTGGCATTGAAAACATTGATAGTCATCCATAGGTTATTGAGGGAGGGTGATCCTACTTTTAGAGAAGAACTTCTTCATTTCTCACAGAGAGGACGCATTCTCCAAATTTCTAATTTCAAGGATGATTCTAGCCCAATTGCTTGGGATTGTTCTGCCTGGGTTCGAACTTATGCATTATTTTTGGAAGAAAGACTAGAATGTTTCCGGGTTCTGAAGTATGATATTGAAGCTGAGCGTCTACCCAAGCATGCCCCAGGGCAGGACAAGGGTCACAGCAGAACCAGGGATTTGGATAGTGAGGAGCTATTGGAGCAGTTGCCTGCTTTGCAGCAACTGCTCTATCGTCTTGTTGGTTGTCGGCCAGAAGGAGCTGCTGTTAGCAACTACGTGATACAATATGCCCTGGCTCTGGTACTAAAAGAGAGCTTTAAGATTTATTGTGCTATTAATGACGGAATTATCAATCTTATTGATAAGTTTTTTGAGATGCCCAGACATGAAGCTATTATAGCCNTTGATGTCTATAAACGTGCGGGTCAGCAGGCAGCAAGTCTATCTGATTTCTATGAAATTTGCAAAGGTTTGGAACTTGCTAGGAATTTTCAGTTCCCTGTTTTAAGAGAGCCTCCACAATCTTTTCTTGTTACCATGGAAGAGTACACAAGGGAGGCACCACGAGTGGTTACAGTTGCAAGTGAGCCACTGTTGCAGTTGACTTACAGACCAGAAGAAGTTCCTGCAATTGAAGATGTTAAATTGTCTGAAGAACAGGAGCCAGAGCCATCAGTTCCTGTCAATGATGATGTTGTCTCAAATTCTGAGCCTGCTCCTCCTCCACCATCTCANAACAATTTTGAAATTGGAGACTTACTGGGGCTGAATGACAATGCACCTGACGCATCNTCAATAGAAGAAAGAAATGCTCTTGCCCTAGCCATAGTCCCCACTGAAACTGGCACTACATCAGCTTTTGGCTCGAGTGCTGCTCAAGTGCGAGATTTTGATCCAACAGGATGGGAGCTTGCCCTGGTCACCACTCCAAGTACCAATATTTCTTCGGTCAATGAGAGACAGTTGGCTGGTGGATTGGATTCTCTGACCCTTAACAGCTTATACGATGAAGGAGCATATAGATCTGCACAGCAACCAGTGTATGGAGTACCAGCCCCAAATCCATTTGAAGTGCACGACCCTTTCGCTTTGTCAAGCAACATCCCTCCTCCACCCAACGTNCAAATGGCAGCCATGGCTCAACAGCAAGTAAATCCATTTGGTCCTTACCAACCTTATCAGCCACAACAGCAGCATATGTTGATGAACCCAGCAAATCCCTTTGGGGATGCAGGATACCAGGCGTTTCCTTTGAATCCTGTTTCTCATCACCCACATAATAACAATCCATTTGGAAGCACTGGCTTATTATAAGAACATTNTTTTGGAGGTGCAATGTATATTGAGTTGGTTTTTGTTGCTAGATAGGTGGTTNCTGGAATAGAATGTTTGTAATGTCAAGAATGGTGGGATATTTCCCCCCTTCTGAACATATCCCCACTCTCAAATTCTCATATGCATATGTATACAATGTTCATATACCTTGAATTGAGGATGTATAGATAAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00112	11320	17276	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0048268 clathrin coat assembly

cellular_component
GO:0030136 clathrin-coated vesicle

molecular_function

GO:0005543 phospholipid binding

GO:0005545 1-phosphatidylinositol binding

GO:0030276 clathrin binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000112s00012299.1	PF07651.11	ANTH	33	312	1.40E-94

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	23.979
SRR1783600	control	23.959
SRR1783602	moderate drought stress	29.173
SRR1811619	moderate drought stress	28.878

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	13.776
DRR006520	Root Summer glycyrrhizin high producing strain	13.493
DRR006521	Root Winter glycyrrhizin high producing strain	58.172
DRR006522	Root Winter glycyrrhizin high producing strain	56.397
DRR006523	Root Summer glycyrrhizin low producing strain	23.754
DRR006524	Root Summer glycyrrhizin low producing strain	23.969
DRR006525	Leaf Summer glycyrrhizin high producing strain	10.100
DRR006526	Leaf Summer glycyrrhizin high producing strain	9.828

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	17.365
SRR2868004	Drought Stress (root)	31.260
SRR2967015	Control (root)	18.686

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	11.966
SRR9715740	Leaf	7.448
SRR9715741	Leaf	20.580
SRR9715739	Root	9.705
SRR9715742	Root	15.918
SRR9715743	Root	14.482

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	74.047
SRR8749028	MeJA induced 9h	81.307
SRR8749029	MeJA induced 9h	129.821
SRR8749030	Uninduced	98.039
SRR8749031	Uninduced	125.631
SRR8749032	Uninduced	105.458

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	18.272
SRR8400027	Control - Root	17.137