Gene detail

Gene detail information of Glyur000111s00011076.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G24830.1	9.00E-120	zinc finger (CCCH-type) family protein / D111/G-patch domain-containing protein
NR	XP_004513890.1	0	PREDICTED: zinc finger CCCH domain-containing protein 18-like [Cicer arietinum]
Swissprot	tr\|Q6K687\|C3H18_ORYSJ	0	Zinc finger CCCH domain-containing protein 18
trEMBL	tr\|I1N0J9\|I1N0J9_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA18G10210.1}

Sequence

Transcript Sequence

>Glyur000111s00011076.1
ATTCATTTACTTATTTGTGACGTTGTTAAAACAATGTTCGTGAAGAATGATGGAATGGCGAGGGAGATTGGAGAAAGGTGAAGAAGGAAAAGGCTGTGATATCATCAATCAATAGCGTGTGAGTGTATCGTGGTTGGGTTGGATTGGGTTGTGTGTTGGTGAGAGAATGGGCAGCGAAGAAGAGAAGGTTCTGGAGATGCAACTGGAGCTTCAATTGCAAGAGCAAAGGGATTCTCTCTCTGCTATCGATCAAGCTCTCCTCTCTGATCCATCCAACCACGAGCTCCTCGCGGTTCATGAGGAGCTTGTTCAGGTAATTAAGGATGCCGAGGAAGGACTTCTTCACCTAAAGCGTGCAAGATTATTACAGGAAGCAGATTCAGTGCTGCGTACCACTAATATTTTCACTGAAGAAGAGAAAGTAGAGCCNCTTGATCCTGCAGATGTTGAACCAGAGCCGCTGGAGGAAAAATGCTATTCTGTTGGATCTAAATGTAGATTCCGTTACAAAGATGGGCGTTNGTACAATGGTCAAGTGGTGCAATTGGATAATTCAATGGCGAAGATTTCATTTCTTACTCCTACATCTGAGAATATGCTGATGTGCAAGTTCTTTTTACAACAACGATGTCGATTTGGTAGTAACTGTCGCCTATCACATGGAGTTGATGTTCAACTGTCCTCCCTTAAGAAATATGTCCCAACAATCTGGAAGCCGTCCCTTGTGGGGTCAAGTATATGGGCAGTCTTAAATGCAAATGCAGGCATTTGGAGAGAAGCTGAGCTCGAGTCTTGGGACGAAAAAGCTGGAGTTGGACAAGTAGTTTTCCGAGATGATGGAANTTCTGTGAAGCTTGGTGCAGAAGAAATGGTATTATCTGAGCATGCAGAAGTGGATNACTTAGAGAGTGATTCCAGCTTAGAACAATCCGATTCCAGCGACTATGAGGAAGAGGAAGAGGAAGCACAAGGTTTAGGATTTCTGGAGATTACCAACTTACAGAAAGGTATTCAAACTGATACCGCTATATTTGCCAAGTGGGAGAACCACACTAGAGGCATAGCTTCCAAAATGATGGCTAATATGGGTTATCGAGAAGGAATGGGTTTAGGTGTAACTGGTCAGGGCATGCTTGATCCCATCCCAGTGAAGGTCCTACCACCAAAGCAATCCTTAGATCATGCACTTGAGTCTCATAATAAAGGGGAAGAGAACNCGGAGAAGCAAGGGAAGAAACGGACCCGAGGGGGTAGGAGAAAACGCGACAAGAAATTCGCAGAAGCGATTCGTGCAGCAAAAGAAGAAGAGGAGCCGACATCAGATCTCTTCGCACTAATAAACAATCAGCTGGCAATGCATGGTGAAGCTTCCAATGATGGATCCATNAAGAAGCAGCAGCAAAGTAAAGGTTCAGGGGAGGGTAAAAAGGTGGATAGGAAGGTGTTGGTTGCTTATGAGGAGGAGGTGAAGGATTTGAAGGCACGGGTCGAAAAGCTTGAACAAATGGCCGATGCAAACAGAAAAGAGAAGCCTGTCTATGAGGCTGCCATGAAGAAATTAATCCAAACCCGCAAGGCTTTGGCAGAGGCTGAAGCAGTTCATGCCTCAGCATCAAATGCAGTTGTTAGCAAAGAAAAAGAGAAGAGATGGCTTAAGTTTTAGTTAGGACTCAGGACTCAGTTCTGTTTGTAGTTGCATAATATAATGGCTTCAATTCATTCTGANGTTGATACTTTTTAAAAAGAAGAAAAGAAGGAAAGAAATTACACAGGTGTAGGTAACTCTACTAAGGTCTTAGTAGATTACACTGCAGTATGTAGCCTTGTACATGTTCTGCCATTATTCTGTTGG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00111	282091	287835	+

Gene family

Gene family	subfamily
Transcription Factors Family	C3H

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0003676 nucleic acid binding

GO:0046872 metal ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000111s00011076.1	PF01585.18	G-patch	296	337	9.50E-12

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	11.480
SRR1783600	control	11.362
SRR1783602	moderate drought stress	11.362
SRR1811619	moderate drought stress	11.170

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	14.249
DRR006520	Root Summer glycyrrhizin high producing strain	13.574
DRR006521	Root Winter glycyrrhizin high producing strain	18.440
DRR006522	Root Winter glycyrrhizin high producing strain	17.970
DRR006523	Root Summer glycyrrhizin low producing strain	12.002
DRR006524	Root Summer glycyrrhizin low producing strain	12.490
DRR006525	Leaf Summer glycyrrhizin high producing strain	6.821
DRR006526	Leaf Summer glycyrrhizin high producing strain	6.622

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	17.726
SRR2868004	Drought Stress (root)	17.340
SRR2967015	Control (root)	17.566

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	11.956
SRR9715740	Leaf	12.564
SRR9715741	Leaf	13.148
SRR9715739	Root	2.270
SRR9715742	Root	9.609
SRR9715743	Root	8.082

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	16.362
SRR8749028	MeJA induced 9h	19.624
SRR8749029	MeJA induced 9h	11.616
SRR8749030	Uninduced	18.210
SRR8749031	Uninduced	12.182
SRR8749032	Uninduced	10.415

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	25.176
SRR8400027	Control - Root	22.886