Gene detail

Gene detail information of Glyur000111s00011069

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G55160.1	1.00E-27	small ubiquitin-like modifier 2
NR	XP_003636518.1	3.66E-99	Small ubiquitin-related modifier [Medicago truncatula]
Swissprot	tr\|Q9FLP6\|SUMO2_ARATH	1.00E-32	Small ubiquitin-related modifier 2
trEMBL	tr\|G7ZWR8\|G7ZWR8_MEDTR	1.00E-99	Small ubiquitin-related modifier {ECO:0000313\|EMBL:AES83656.1}

Sequence

Transcript Sequence

>Glyur000111s00011069.1
GGTGGGGAAGAAGTTTACTTCAGGATCAGGAGAAGAACTCAGCTGAGAAAACTTATGGATGCTTACTGTGATCGACAGTCTGTGGATTTCAAAGCAACTTCCTTTCTGTTTAAGGGGCGCCGCATCCGGGCCGATCAGACTCCATATGAGCTGGAAATGGAGGATAGGGATGAAATACATGCTTTATATTATAAGCTCGCACACATCAAACTGAAGGTCAAAAGCCAGGACGGGGATGAAATTTTCTTTACACTTAGCAGAAGCACTCCACTGAGAAAGCTCATGAATGCTTACTGTGATAGGCAGTCTGTAGATTTTAACTCAATTGCTTTTACAGTTGATGGGCGTCTCCTCCGGGCGGAGCAGTCTCCAGATGAGCTGCAATTGGTGGATGGGGATGAAATAGATGCCATTTTCTATGATCAGAGTGCACGGATCAAACTCAAGGTCAAGGATCAGGATGGGAATGAAATTTCTTTTGATATTAGAAGAAGCAATCCACTGAGGAAGCTCATGAAAGCTTACTGTGATCGTCAGTCACTGGATTNTAACTCAATTGCTTTTCTGTTTAAAGGGCGTCACCTCCTGGAAGAGCAGTCTCCAGATGAGCTGCAAATGGAGGATGGGGATGAAATAGATGCCATCTTCTTTGATGAGAGTGAACGCATCAAGCTCAAGGTCAAGGGCCAGGATGGCTACAGAGCTTCCTTCAGGACCCATAGAAGCACTCCATTGGAAAGGCTTATGGTTCTTTACTGTTATCGATATTGTTTGAATCTTAACGGAGTTTCTTTTCTGTTTAATGAGCATCTCCTCAGGGCAGAGCAGACTCCAGATGAGTATGGGGAAGAAGTTCACTTCAGGATCAAGAGAAGAACTCCGCTGAGAAAGCTTATGAAAGGTTACTGTGATCAAAACTCTGGGGATTTCACTTTCAATGAAACTTATTTTCATTTTAAGGAGTGTCGCATTCGGGCAGAGCAGACTCCATATGAGCTGGAAATGGAGGATGGGGATGAAATAGAAGCATCCTATTGTGAGGACCCAGACATCAAGCTCAAGGTTAAGAGCCAGGATGGCAGTGAAGTTTTCTTGAGTATCGAGAAAAACACTAAACTGAAAAAGCTCATGGATGTATACTGTTATCGAATGTGTCTCGATATTAATGGGGTTGATTTTCAGTATAATGGTAGTTTCATCCAGCCAGAGAAGACTCCAATCGAGCTGGGAATGATGTATGGGGATGAAATAGTTGCCATTCTTCAACAGAGATGGATCTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00111	245309	257847	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000111s00011069.1	PF11976.3	Rad60-SLD	2	62	8.80E-15
Glyur000111s00011069.1	PF11976.3	Rad60-SLD	69	138	4.20E-17
Glyur000111s00011069.1	PF11976.3	Rad60-SLD	146	215	4.20E-20
Glyur000111s00011069.1	PF11976.3	Rad60-SLD	282	343	8.30E-11
Glyur000111s00011069.1	PF11976.3	Rad60-SLD	351	418	5.70E-13

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.197
SRR1783600	control	2.896
SRR1783602	moderate drought stress	3.089
SRR1811619	moderate drought stress	3.255

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.972
DRR006520	Root Summer glycyrrhizin high producing strain	2.398
DRR006521	Root Winter glycyrrhizin high producing strain	1.899
DRR006522	Root Winter glycyrrhizin high producing strain	2.161
DRR006523	Root Summer glycyrrhizin low producing strain	1.557
DRR006524	Root Summer glycyrrhizin low producing strain	1.537
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.677
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.834

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	2.832
SRR2868004	Drought Stress (root)	1.139
SRR2967015	Control (root)	2.532

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.694
SRR9715740	Leaf	1.443
SRR9715741	Leaf	1.019
SRR9715739	Root	2.417
SRR9715742	Root	1.516
SRR9715743	Root	2.278

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.326
SRR8749028	MeJA induced 9h	0.055
SRR8749029	MeJA induced 9h	0.212
SRR8749030	Uninduced	0.011
SRR8749031	Uninduced	0.032
SRR8749032	Uninduced	0.056

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	8.544
SRR8400027	Control - Root	8.364