Gene detail

Gene detail information of Glyur000111s00011064

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G62300.1	2.00E-62	WRKY family transcription factor
NR	KEH33882.1	7.21E-170	WRKY1b transcription factor [Medicago truncatula]
Swissprot	tr\|Q9C519\|WRKY6_ARATH	6.00E-96	WRKY transcription factor 6
trEMBL	tr\|A0A072UWD7\|A0A072UWD7_MEDTR	3.00E-170	WRKY1b transcription factor {ECO:0000313\|EMBL:KEH33882.1}

Sequence

Transcript Sequence

>Glyur000111s00011064.1
ATGGAAGAAGCAATGGCCTGCAATGATATTGCCATGGACAACTCTAGTAGTGGTGGAGTAATTGCACATTCTTCTTCAGTCATNTCGTTTAATGGGAAACGACTAGTCATGGATGAGATGGATTTCTTTGCAGAGAATGACAACAAGACAATTAGTAGTCCAGTTAATGATCATCACCAAACGGTGGTGCACCAAATGGAGCTTCATACTAGTTTAGATCTCCTTACAAAGATTTCTCCTAGCAATAGATCAACTTTGGATGTGGAAGATGGGGCATCGGAGGCCAAAAGTAATAAGAAAAACGAGTTTGTAGCTTTGGTAGCTGAATTGCACCACATGACTGCTGAAAATCAACGTTTGAGAGAGCTGATTGATCGGGCGAACAATGATTACAATGCCCTACACAAGCATCTCATGAAGCTGATGCAGGAACAACAACATAAACAAGAGATTACTAGCGGAGGCACAGGGGAGAAGAGTGATGGTACAATGATTCCAAGGCCATTCTTGGACATTGGTTTTGGTGAGAAGGATATTGAGACATCGCAGCAATCTTCAGAGGGGAAAGTAGTAGTGGGAGAGAGCAAAGGAAGCAGCATGGTTCATGAGTTGGAGTGCAGCAATAAGATTAGGAAGATTTGCAGCAGTGGAGATGTTGTTCATGAGTTGGACCCACAAGATCATGAGAGACCAGCAGCTCCTAATAACAACAAAGCATTTNCAGGGTGGCTCTCAAACCAAGTCCCCATCAGGGATAATAATGTTGATGATCAAGCATCAGAATCAATGATCAAGAAGGCTCGCGTATCAGTTCGAGCAAGATCAGAATCTTCTATGATTTCAGATGGATGTCAATGGAGAAAGTATGGGCAGAAGATGGCAAAAGGGAATCCATGTCCGAGAGCTTATTATCGTTGCACAATGGGGACTGGTTGTCCAGTTCGTAAGCAAGTACAGAGGTGTGCTGAAGATAGAAGTGTGTTGGTGACAACATATGAAGGGCAGCACAACCATGCACTCCCTCCAACAGCAAAGGCAATGGCATCAACCACATCAGCAGCAGCATCAATGCTTCTCTCAGGATCAATGCCAAGTTCAGATGGACTAATGAACCCAACCATACTAGAAAGTGCANCACTCCCTCACCCTGTTTGCTCACAGAACATGGCTACCCTCTCTGCTTCAGCTCCATTCCCTACCATCACATTGGATCTCACTCAACAAAATTGTGCTCCCAATAATAATACCAATTCCTCACACCAACAACAGGGGCAGCAACTTAGCCAGCTCCTTCCCCCACTTTTGGCTCACAAGTTCATGTCAGCAGCTCCAANCGGTTTTACTGCAGACACAGTGAATAATGCAACTTCATTTGCTGATACAGTGAATGCAGCAACAGCTGCTATCACTGCAGACCCCAAATTCACAGCTGCTCTTGTGGCTGCCATAACATCCATCATGGGAAGTTCACGTAGTCCAAACAATAATGGTACCAATGGTAGTACTACAAGTGGAGACCAGCACTGCAATAATGCATAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00111	221816	225098	+

Gene family

Gene family	subfamily
Transcription Factors Family	WRKY

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006355 regulation of transcription, DNA-templated

molecular_function

GO:0003700 transcription factor activity, sequence-specific DNA binding

GO:0043565 sequence-specific DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000111s00011064.1	PF03106.10	WRKY	281	339	2.40E-27

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.023
SRR1783600	control	0.024
SRR1783602	moderate drought stress	0.048
SRR1811619	moderate drought stress	0.049

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.000
DRR006520	Root Summer glycyrrhizin high producing strain	0.000
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.000
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.000

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	2.429
SRR2868004	Drought Stress (root)	13.839
SRR2967015	Control (root)	8.285

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.085
SRR9715740	Leaf	0.125
SRR9715741	Leaf	0.254
SRR9715739	Root	0.007
SRR9715742	Root	0.040
SRR9715743	Root	0.040

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	25.603
SRR8749028	MeJA induced 9h	41.021
SRR8749029	MeJA induced 9h	22.634
SRR8749030	Uninduced	207.902
SRR8749031	Uninduced	63.294
SRR8749032	Uninduced	14.957

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	1.428
SRR8400027	Control - Root	1.065