Gene detail

Gene detail information of Glyur000111s00011062

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G26860.1	3.00E-112	Predicted pyridoxal phosphate-dependent enzyme, YBL036C type
NR	XP_004513878.1	6.54E-167	PREDICTED: proline synthase co-transcribed bacterial homolog protein-like isoform X1 [Cicer arietinum]
COG	YP_002429571.1	2.00E-51	alanine racemase domain-containing protein [Desulfatibacillum alkenivorans AK-01]
trEMBL	tr\|I1N0K8\|I1N0K8_SOYBN	3.00E-163	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA18G10370.1}

Sequence

Transcript Sequence

>Glyur000111s00011062.1
ATTTAAAAAAAAAGATCCACATTAAACTCAACGTGTACCATGAATTTTGTGTAATTTATTTTTTTCTTTTGGTGTTTTTTTGTCTCGTGTTGGTTGTTGTACCACCTCAACACACACACACACACACACACAGATACAAGAGGAGCTCCACTTGTTTTCGCTTCGTCCTCCAATAATAATCCATAACGCCCCCCAATCTGATTCCTCGGCGAATGGCTTCTCCGGTGGTGGCAGAGGGCAGGGCCGTCTCGGCGCTCCGGTCGGTGATGCTCCGTGTGCAGCAGGCGGCGGAGCGAGCCGGCACCAAACCCGACCGAATCCGGGTCGTGGCGGTTTCGAAGACCAAACCCGTTTCCATGATTCGCCAACTCTACGACGCTGGTCACCGATGCTTCGGCGAAAACTACGTCCAAGAAATCGTCGAGAAAGCTCCTCAGCTTCCACAAGACATTGATTGGCATTTCATTGGGCATTTGCAAAGCAACAAAGTCAAAACGCTTTTGGGCGGAGTTCCTAATCTAGCCATGGTTGAGGGCGTGGACAATCAGAAGGTGNCAAATCATCTTGACCGTATGGTTTCAACCCTTGGAAGAAATCCTCTGAAGGTTTTGGTGCAAGTAAATACCAGTGGAGAAGCATCCAAATCTGGCGTTGATCCTTCCGATTGTGTTGAGCTCGCAAAACATGTGAAATCGAGCTGCCCAAACTTAGTATTCTCTGGCTTAATGACAATAGGAATGCTAGACTATACCTCAACTCCTCAGAACTTTCAGACCCTATCAAACTGCAGGACTGAAGTTTGCAAGGCACTTGAAATGGACGAGGAACAGTGTGAACTGTCAATGGGCATGTCCGGTGATTTTGAGTCAGCGATTGAAATGGGTAGTACTAATGTGAGAATTGGGTCCACAATATTTGGACCTAGGGAGTATGCAAAGAAACAATAATAGCAGGAGCTTGCAATCTCTCTTTCTCTTATAAAACAGAATGAATACATTATAACACACAAATCTCCTGAATTGTATGTATCAGTTACCTTTGTAATTGGTGTATCGGTAATAATAAATTTCATAGTTGGTCTCTATACTAAGAATAAACCGTATAAAAAGTCTTCCTATTTCTTGTTTTCTTAAAGAATGCTAATTGGAGGGAGAGAGAGGGAAGCAAATATGATGGTATTTCATCGTGATC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00111	206658	211313	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000111s00011062.1	PF01168.15	Ala_racemase_N	18	238	3.20E-42

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	5.303
SRR1783600	control	5.244
SRR1783602	moderate drought stress	7.966
SRR1811619	moderate drought stress	7.948

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	27.557
DRR006520	Root Summer glycyrrhizin high producing strain	26.866
DRR006521	Root Winter glycyrrhizin high producing strain	33.869
DRR006522	Root Winter glycyrrhizin high producing strain	33.531
DRR006523	Root Summer glycyrrhizin low producing strain	27.851
DRR006524	Root Summer glycyrrhizin low producing strain	28.613
DRR006525	Leaf Summer glycyrrhizin high producing strain	102.280
DRR006526	Leaf Summer glycyrrhizin high producing strain	101.329

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	23.187
SRR2868004	Drought Stress (root)	28.615
SRR2967015	Control (root)	26.895

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	137.692
SRR9715740	Leaf	226.837
SRR9715741	Leaf	118.324
SRR9715739	Root	18.442
SRR9715742	Root	15.802
SRR9715743	Root	14.637

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	11.698
SRR8749028	MeJA induced 9h	10.526
SRR8749029	MeJA induced 9h	12.537
SRR8749030	Uninduced	11.588
SRR8749031	Uninduced	4.782
SRR8749032	Uninduced	8.013

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	24.840
SRR8400027	Control - Root	31.698