Gene detail

Gene detail information of Glyur000111s00011061.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G20440.2	0	Alpha amylase family protein
NR	XP_004513877.1	0	PREDICTED: 1,4-alpha-glucan-branching enzyme 3, chloroplastic/amyloplastic-like [Cicer arietinum]
COG	YP_002603621.1	2.00E-134	protein Glprotein GB2 [Desulfobacterium autotrophicum HRM2]
Swissprot	tr\|D2WL32\|GLGB3_ARATH	0	1,4-alpha-glucan-branching enzyme 3, chloroplastic/amyloplastic (Precursor)
trEMBL	tr\|A0A072UXT6\|A0A072UXT6_MEDTR	0	1,4-alpha-glucan-branching enzyme/amyloplastic protein {ECO:0000313\|EMBL:KEH33878.1}

Sequence

Transcript Sequence

>Glyur000111s00011061.1
ATGACAACCCTTTCATTCCCACTCAAAATCTGCTCCCATCCAACTCCAACCACCACCTTCCTCCTTCAACCCCAAACCGTTACCTTCTCCCCCATAAAATCCACCGTAACAACGGCATGTTCCGCCTCACAAAACCCCCACCAACGCCAAAAGCAGCAGCACCAGCAGAAGCAGAAGAAGAACCAGTCCAATGCCAACGCCTCTTCCGATGGCGAAAAGGGCTTCGACCCTGCTGGCTTCCTCGCCAAACGCGGCATTTCCCATAAAGTATTTGCCCAGTATAAAGCATTGAAGGACCTGAAAGATGAAATTTTGAAACGGCACATGAACCTCATGGAGATGGCTTCTGGGTTTGAGATATTGGGTATGCATCGTCATCCAGAACATCGGGTGGATTATATGGAATGGGCTCCAGGAGCTCGCTATTGTGCAATTACTGGTGACTTCAATGGCTGGTCAGCTACAGAAAATTGTGCAAGAGAGCATTTCTTTGGTCATGATGATTATGGATACTGGTTTATCATTCTTCAAGATAAGCTGAGAGAGGGAGAAGTGGCAGATGAACTCTATTTTCAGCAGTATAACTANGTAGATGATTATGATAAAGGGGATAGTGGTGTCACCATCGAGGAGCTCTTCAAGAAAGCAAATGATGAGTACTGGCAACCAGGAGAAGACCGTTACCTAAAAAACCATTTTGAAGTTCCAGCAAAGTTATATGAACAGATATTTGGTCCTAATGGACCTCAAACTATGGAGGAGTTGGAGGACATACCAGATGCAGAAACAAGATATAAGGAATGGGCAGCAAAGCATGGGCCTTCCCGTCATGCTGTGATTGATAATGGCGAGAATTATGACATATTTAATGTGAAGGTTGATCCAGAATGGCAAGAGAGAATTCGTGCACTGAAACCTCCTATAGCATACTGGCTTGAGACACGTAAAGGTAGGAAGGCATGGTTGAAAAAGTATATTCCTGGTATTCCTCATGGCAGCAAGTACAGGGTTTACTTTAACACTCCTAATGGATCGTTGGAGCGGGTACCTGCTTGGGCTACATATGTGCAGCCAGACTTAGATGGAAGGCAAGCATATGCAATCCACTGGGAACCACCCCCTGAACTTGCATACAAATGGAAAAACACAAGCCCCAAAGTACCAAAATCCTTGCGGATATATGAAGCTCATGTTGGAATTAGTGGATCTGAGCCAAAAATATCCTCATTTAATGATTTCACTGACAAGGTTCTTCCTTACATAAAGGAAGCTGGATACAATGCAATCCAGTTGATTGGAGTTGTTGAGCACAAGGATTATTTTACTGTTGGTTACAGAGTTACCAATTTTTATGCCGTTAGTAGTCGATATGGCACTCCTGATGACTTCAAGCGATTAGTTGANGAGGCACACGGACTAGGACTGCTGGTCTTTTTAGAGATTGTCCATTCATATGCGGCTGCAAATGAGATGGTTGGATTATCAATGTTCGATGGATCTAATGACTGTTATTTTCATTCTGGTAAACGGGGGCAACACAAGTTTTGGGGAACCAGAATGTTCAAATATGGCGACCATGATGTTTTGCATTTCCTTCTCTCAAACTTGAACTGGTGGATTGTGGAGTATCAAATTGATGGTTTCCAGTTCCATTCACTCTCATCTATGATGTATACTCACAACGGTTTTGCATCTTTTACTGGTGACTTGGAGGAGTACTGCAACCAATATGTTGACAAGGATGCACTATTGTATCTTATCTTGGCCAATGAGATACTACATGTTCTTTACCCAAATATTGTCACAATTGCGGAAGATGCAACATATTACCCTGGATTATGTGAACCAACTTCTCAAGGTGGATTGGGATTTGATTACTATGTCAACCTTTCTGCATCCGAGATGTGGTCAACTTTTCTTGAGAGTGTTCCTGACCATGAATGGAGCATGACTAAGATTGTTGACACATTAATTTCCAAAAAAGAATACGCTGATAAGATGCTTTTGTACGCTGAAAATCACAACCAGTCCATATCTGGAAGGCGGTCCTTTGCCGAAATATTGTTTGGTGAAATAGATGAGCATTCACATCACTATAAGGAGTCTTTATTGAGGGGATCTTCATTGCATAAAATGATCAGATTGATCACGTTAACAATTGGTGGTCGGGCCTATATGAACTTCATGGGCAATGAATTTGGGCATCCAGAGAGAGTTGAGTTTCCAACATCAAGCAACAACAACTCATATTCGCTTGCTAATCGTCAGTGGGATCTTTTGACACAAGATGGAGTTTTCCGTGATTTATTTGCCTTCGATAAGGACATGATGAAGCTGGATGAAAATGAGAGAGTGCTTTCACGAGGTTTTCCGACCTTTCACCATGTGAATGACAGTTCAATGGTCATATCTTACATCAGAGGCCCCCTTCTCTTCATTTTCAATTTTCACCCAACAGATTCTTATGAAAGTTACAGAGTAGGTGTGGAAGAAGCTGGGGAATATCAACTTATTCTGAACACGGANGAATTAAAGTATGCAGGTCAGGGGATCCTTAAAGAAGACCAGTATTTTCAAAGAACTATCAGCAAAAGAGTTGATGGCCTTCGAAACTGCATAGAGGTGCCACTCCCAAGCAGAACTGCTCAGGTTTACAAGTTAAAGCGGATTTTGAGAATATGAGGCATACTACAACATCTGTGGTGTAACTTTAAGCCAGAACTTGATCACATTTGAAGACTGAGCTTTCTTTGGTATGTCCAACGAATGAAGAAAAATGAAAGGGTAAATATGATCCCCAACATACCTGTGCATGAAAGTTCAGAACAAATGGGTCACTCCTAGGTTCATGAAGATGCAAGATACTGGAATNTGGCACTGTATATGTGCTTGTAAACCCTAATGATCCATATACCACAAATGTGATTGGTTGTGTAAAGAGTTACTTGAAAATTTAGACTGATGATATAGATTTTAGGGTGAGAAACTAACTAATGGGATAGGTTCTTTATTTATGGGAGCTTTCAATTATATTCATACAGCAAAGAGGAGTCTCTGGAGGCTGCAGTAACCTAAATCTTCAGTTGCAACTACTGAACCANTATTGATTTGTTGTAACCTTAAATAAATCACACTACCTGAATTGTCTGTATATTAATTAATTCAGTTCAATTAAGTGATAGGAAAAATGTAAATTTTCTAATTAGAGGATGAATCAAGTGTGGTAGATGAATT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00111	193372	203347	-

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	CBM48,CBM48,GH13

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K00700	GBE1, glgB	EC:2.4.1.18	Starch and sucrose metabolism	map00500

Gene Ontology

biological_process

GO:0005975 carbohydrate metabolic process

GO:0005978 glycogen biosynthetic process

molecular_function

GO:0003824 catalytic activity

GO:0003844 1,4-alpha-glucan branching enzyme activity

GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds

GO:0043169 cation binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000111s00011061.1	PF02922.13	CBM_48	121	184	0.00012
Glyur000111s00011061.1	PF00128.19	Alpha-amylase	417	483	1.60E-12
Glyur000111s00011061.1	PF02806.13	Alpha-amylase_C	795	888	1.80E-17

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	5.266
SRR1783600	control	5.101
SRR1783602	moderate drought stress	7.546
SRR1811619	moderate drought stress	7.381

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	4.603
DRR006520	Root Summer glycyrrhizin high producing strain	4.434
DRR006521	Root Winter glycyrrhizin high producing strain	3.189
DRR006522	Root Winter glycyrrhizin high producing strain	3.040
DRR006523	Root Summer glycyrrhizin low producing strain	5.029
DRR006524	Root Summer glycyrrhizin low producing strain	4.948
DRR006525	Leaf Summer glycyrrhizin high producing strain	4.870
DRR006526	Leaf Summer glycyrrhizin high producing strain	4.928

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	5.482
SRR2868004	Drought Stress (root)	4.503
SRR2967015	Control (root)	6.372

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	3.807
SRR9715740	Leaf	4.789
SRR9715741	Leaf	3.391
SRR9715739	Root	0.722
SRR9715742	Root	2.429
SRR9715743	Root	1.928

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	9.291
SRR8749028	MeJA induced 9h	9.507
SRR8749029	MeJA induced 9h	6.824
SRR8749030	Uninduced	2.329
SRR8749031	Uninduced	0.929
SRR8749032	Uninduced	1.382

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	6.663
SRR8400027	Control - Root	6.063