Gene detail

Gene detail information of Glyur000111s00011057.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G26850.1	0	mannose-1-phosphate guanylyltransferase (GDP)s;GDP-galactose:mannose-1-phosphate guanylyltransferases;GDP-galactose:glucose-1-phosphate guanylyltransferases;GDP-galactose:myoinositol-1-phosphate guanylyltransferases;glucose-1-phosphate guanylyltransferase
NR	XP_004514559.1	0	PREDICTED: GDP-L-galactose phosphorylase 1-like [Cicer arietinum]
COG	YP_314743.1	2.00E-09	hypothetical protein Tbd_0985 [Thiobacillus denitrificans ATCC 25259]
Swissprot	tr\|Q8RWE8\|GGAP1_ARATH	0	GDP-L-galactose phosphorylase 1
trEMBL	tr\|I1N0L1\|I1N0L1_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA18G10430.1}

Sequence

Transcript Sequence

>Glyur000111s00011057.1
ATTCATGCTCCCTCTTCCCATCAAAGCCACAATGCCAAGGACACACAGCAACAAGGCACAAAACAATGACAACCACAATCACACTCTAATCCTAATCTCCCACCCTTTAAGACCACAAATCCTCTTTCTCTCTTCTCTTCTCTCTCTCTTTCTATCTATAAAACAAAAACCCTCCTCTCCTCCTCCTCACATCACCACAACAACAACAACAACCCCCCAATCCCCTCTCCCTCCAAATTCCTCATCTGGGTCTCCCACCGTGCTCCAAAGTCCCTCCCTTTTGGCCNTTTCGCGTGGTGGGTCGCAGAAAAAAGGAAGAGAATCAGAAGCCAGGAGAAGAAGGAGAAAGGAGAGATTTTAGCTTTCTGGGTGGGTTTGAAAAAAACCCTTTATTGGGGGTGTTGAAGCATTGCAGACATCACGGCTATTCAAAGGGTTCCTCGGCCTCTCACGCATGCCCGTTGTGTCCGACGCAAGGGTTGTGTGACAGAGAGCAGCAACCCTTCGCCGCACGGGGGGCGTGGCGCCTTGCCTTCCGAAGGTGGCAGCCCCTCCGACCTCCTCTTCCTCGCAGGCGGTGGTTCCCTCCTCTTCTAGGAATTTAGGAACACTAGTTGTAGTAATAGTCATTTCTATTAATTAAGATCAGATCTCAATTCAAAAGCTGTTTCTTCTTCTTCTTCTTCTTCGTCTTCTTCTTCTTCTTCGTCTTCTTCTTCTTCTTCTACTTTTTGTCTTGGTAGCTTTTGTTGTTGTTGTTTTTTGAATTTGGTGAGAGAGAGTGTAGGCAAGGATGTTAAGCATTAAGAGGGTTCCCACTGTGGTTTCCAATTACCAAAACGAGGAGGCTGCTGCTGCTGCCCCTGTCGGTGGTTGTGGTAGGAATTGCCTCAAGAGTTGTTGCATTCAAGAGGCCAAGCTCCCTTTGTATGCTTTCAAAAGGGTTGACAATGCTGAGGGAAAGGACTNGCACCTCTTTGCATGCAAGGAGCAACCCGTGGCCTTTTTGGACTCACTTGCTCTTGGGGAGTGGGAGGATCGCATGCAGAGAGGGCTTTTCCGCTATGATGTTACTGCCTGTGAAACCAAGGTGATTCCGGGTGAGTATGGTTTTATTGCCCAGCTGAACGAGGGTCGCCACCTCAAGAAGAGACCAACCGAGTTCCGAGTTGACAAGGTCCTCCAGCCCTTTGATGAAACCAAATTCAACTTCACTAAAGTTGGGCAAGAAGAGATCCTGTTTCAATTTGAGGCTAGCAGTGATGGGGAAGCTCAGTTCTTCCCAAATGCACCAATTGATGTTGAGAACTCTCCTAGTTTTGTTGCCATCAATGTCAGTCCTATTGAATATGGGCATGTGCTGCTGATTCCTCGAATTTTCGAGTGTTTGCCCCAGAGGATTGATCATGCAAGCTTCTTGCTTGCACTTCACATGGCAGCTGAAGCAGGAAATCCATATTTTCGATTGGGTTACAACAGCCTGGGTGCATTTGCCACTATTAACCATCTTCACTTCCAGGCATATTATTTGGCCCTGCCTTTTCCAATTGAGAAGGCTCCCACTAGGAAGGTTGCCAAATTAAGTGGTGGTGTGAAAATATCTAAACTGCTAAACTATCCAGTCAGAGGTCTTGTCTTTGAGGGTGGTCATACACTGGATGATTTAGCAAACACTGTTTCTGAAGCCTGTATCTGCCTTCAACACAACAACATACCTTACAATGTACTTATTTCTGATTGTGGAAGGCGAGTCTTCCTCTTACCACAGTGCTATGCAGAGAAACAAGCTCTTGGAGAAGTGAGTGCTGAGCTTCTGGACACCCAAGTTAATCCTGCTGTGTGGGAAATTAGTGGGCACATGGTGCTGAAGAGGAAGAAGGACTATGATGAGGCATCTGAGGCCAATGCATGGAGGCTTCTTGCAGAGGTCTCCCTCCCTGAAGAGAGGTTTCAAGAAGTCAATGCTCTTGTTTTTGAAGCCATTATCACATCTGTTGAGATGGATGTGAAACCTGATGCAGTTAGCTCAAGCACTCAGCCTGCTATGGTAGCTGCCTAGCTGGTTCACAAGAATGTCTTGTTCTTCAGTAACAAGGCTCTGATGAATAAAATTCCTGTTCTTCAGTAACAAGGCTCTGATGAATAAAATTCCTAGTGGTTTTGTACTATAGTGGTTCTGCTATATTATGTTTCAGTTCTAGTCTGTGCCCTACCCTGGTGGCAGTTGGTTAAGTTTGAAGTGTTGTGATTGCTTTAAGGACTTGGTGAAATAAGTGGTTTGTATTCACTATCTGCTTGGCTGTATGTGGTGCTTGATTTATGGTTCAATACGATGTAAGAACTGCTCTTTTGAGCTTATTGACTGGTTAGATATTCGTGGATGAACAATGTTATTCTCACGTACTTCCATTCATGATTTTTTTTTACTTTTGAATAGTTTAATCGTTTTATTTGGGTAATACACTTTGATTTTCTTACATATGTGCGGATAACAATTTTCTTTGGAGGGTGTATAATGGTGTGGGATGTATAGGTTTCCCTTGTGAGAAATCTAGCATACGCAATGTGATATAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00111	165861	169117	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K14190	VTC2_5	EC:2.7.7.69	Ascorbate and aldarate metabolism	map00053

Gene Ontology

molecular_function
GO:0080048 GDP-D-glucose phosphorylase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--	--

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	31.839
SRR1783600	control	32.076
SRR1783602	moderate drought stress	30.784
SRR1811619	moderate drought stress	32.673

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	51.624
DRR006520	Root Summer glycyrrhizin high producing strain	51.132
DRR006521	Root Winter glycyrrhizin high producing strain	53.739
DRR006522	Root Winter glycyrrhizin high producing strain	52.095
DRR006523	Root Summer glycyrrhizin low producing strain	50.600
DRR006524	Root Summer glycyrrhizin low producing strain	50.723
DRR006525	Leaf Summer glycyrrhizin high producing strain	201.900
DRR006526	Leaf Summer glycyrrhizin high producing strain	200.725

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	102.845
SRR2868004	Drought Stress (root)	118.414
SRR2967015	Control (root)	105.386

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	543.324
SRR9715740	Leaf	816.887
SRR9715741	Leaf	574.022
SRR9715739	Root	68.995
SRR9715742	Root	71.615
SRR9715743	Root	72.888

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	25.186
SRR8749028	MeJA induced 9h	42.468
SRR8749029	MeJA induced 9h	17.278
SRR8749030	Uninduced	24.931
SRR8749031	Uninduced	10.681
SRR8749032	Uninduced	23.729

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	94.545
SRR8400027	Control - Root	83.070