Gene detail

Gene detail information of Glyur000111s00011050.1

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT4G26900.1	HIS HF
NR	XP_003551923.1	PREDICTED: imidazole glycerol phosphate synthase hisHF, chloroplastic-like [Glycine max]
COG	YP_007244255.1	imidazole glycerol phosphate synthase, glutamine amidotransferase subunit [Thioflavicoccus mobilis 8321]
Swissprot	tr\|Q9SZ30\|HIS4_ARATH	Cyclase (Precursor)
trEMBL	tr\|I1N0Y1\|I1N0Y1_SOYBN	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA18G12920.1}

Sequence

Transcript Sequence

>Glyur000111s00011050.1
CTGTTGAGAGGTTGCATTCAGAGCGAAGCAGCAGCAGCAACAACAATGGAGGCGCCGCCATTTGCTGCTTCACACTCTTCTTCCTCTCTCCTTCTTCTTCGCAAAAAACCACTCTCGTCCACTAGATTCTCCCATTTTGGCAATGTCAAAAGCTCAAGGAACTTCTCAATTCGTGCCTCCTCTTCTGGAGACTCTGTTGTGACTTTGCTTGATTATGGTGCTGGCAACGTTCGGAGTGTCAGGAATGCTATTAGGTCCCTCGGGTTTGACATCGAAGATGTGCAAACCCCGGAAGACATTTTAAATGCAAGACGCTTAGTTTTCCCGGGTGTTGGAGCATTTGCTGCTGCTATGGAGGTGTTAAGCAAAACTGGGATGGATGAAGCACTATGTTCATATATTGAAAAGGATCGCCCATTTTTAGGCATTTGTCTTGGTCTTCAATTGCTTTTTGAATCTAGTGAGGAGAATGGACTAGTAAAAGGTCTTGGCTTAATACCTGGTACCGTTGGACGATTTGATTCATCAAATGGTCTTAGAGTACCACATATTGGCTGGAATGCTTTACAAATCGCAATGGACTCGGAAATTTTGGATGATGTTGGAAACCACCATGTCTATTTTGTGCACTCTTATCGTGCCATGCCTTCAGATGACAACAAAGAGTGGGTATCCTCCACTTGCAACTATGGTGAGAAATTTATAGCATCTATTAGAAGAGGAAATGTGCATGCAGTTCAGTTCCATCCAGAGAAGAGTGGAGGCAAGTTCTATCTTCCTTACCAATCTTCAAATGTTGGTCTCTCTGTTTTGAGAAGATTCTTGTATCCGAAATCAAATGTGACAAAGAAGCCTGGTGAAGGCAAAGCTTCGAAACTTGCAAAAAGGGTGATTGCGTGCCTTGATGTGAGAACAAATGATATGGGGGACCTCGTTGTAACCAAAGGAGACCAGTATGATGTAAGAGAACATACAAAAGAGAATGAGGTAAGGAATCTTGGCAAGCCAGTTGAGCTTGCTGGACAGTACTATAAAGATGGAGCTGATGAGGTCAGCTTTCTAAACATTACTGGATTTCGCGACTTCCCTCTTGGTGATTTACCGATGTTGCAGGTATTGCGATACACATCAGAGAATGTTTTTGTACCCTTAACAGTTGGGGGCGGAATTAGAGATTTTACAGATTCAAATGGAAGGCACTATTCTAGTTTGGAAGTTGCTGCAGAATATTTTAGATCTGGGGCCGACAAGATTTCCATTGGAAGTGATGCAGTTTATGCTGCAGAAGAATATTTAAGAACTGGAGTAAAGACTGGGAAGACCAGTTTAGAGCAGATATCCAGAGTTTATGGGAATCAGGCAGTGGTTGTTAGTATTGATCCCCGTAGGGTTTACATAAAGGATCCTAATGATGTGCATTTCAAGACCATAAGGGTTTCAAGTCTAGGTCCTAATGGAGAAGAATATGCCTGGTATCAGTGTACAGTTAATGGGGGGCGAGAAGGCCGGCCAATTGGTGCTTATGAACTAGCAAAAGCTGTTGAAGAGCTTGGTGCTGGAGAAATACTACTTAACTGCATCGATTGTGATGGTCAAGGAAAAGGATTTGATGTAGATTTAATTAAGTTGATCTCAGATGCTGTAAGTATCCCTGTGATTGCAAGTAGTGGTGCTGGCTCTCCCGAGCACTTTTCCGATGTGTTTTCTAAAACAAATGCATCTGCTGCACTTGCTGCTGGCATTTTTCATAGGAAGGAGGTGCCTATTCAGTCGGTGAAAGAGCATTTGTTGAAGGAGGGCATAGAAGTCCGAATCTGATATTCTATATTTTCAGTGGCAAAAATTTTAAGATGCACTATGGAATAAGCAAATCTGGTTGTATGTTATAGCCCTCAAAATCTCAACTTTTTTGGATCATAAAAAGCATTTCAGAATGTGACCTGTCACCTTTGTGAAGGAGGTTTACCATGTG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00111	143278	149908	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01663	HIS7	EC:2.4.2.- 4.1.3.-	Biosynthesis of amino acids	map01230
			Histidine metabolism	map00340

Gene Ontology

biological_process

GO:0000105 histidine biosynthetic process

GO:0008152 metabolic process

cellular_component
GO:0005737 cytoplasm

molecular_function

GO:0000107 imidazoleglycerol-phosphate synthase activity

GO:0003824 catalytic activity

GO:0016763 transferase activity, transferring pentosyl groups

GO:0016833 oxo-acid-lyase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000111s00011050.1	PF00117.23	GATase	54	241	2.10E-28
Glyur000111s00011050.1	PF00977.16	His_biosynth	281	572	3.30E-45

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	17.037
SRR1783600	control	16.874
SRR1783602	moderate drought stress	14.106
SRR1811619	moderate drought stress	13.854

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	22.121
DRR006520	Root Summer glycyrrhizin high producing strain	22.174
DRR006521	Root Winter glycyrrhizin high producing strain	14.714
DRR006522	Root Winter glycyrrhizin high producing strain	14.323
DRR006523	Root Summer glycyrrhizin low producing strain	26.770
DRR006524	Root Summer glycyrrhizin low producing strain	26.872
DRR006525	Leaf Summer glycyrrhizin high producing strain	7.306
DRR006526	Leaf Summer glycyrrhizin high producing strain	7.365

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	40.379
SRR2868004	Drought Stress (root)	29.413
SRR2967015	Control (root)	30.726

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	17.063
SRR9715740	Leaf	11.299
SRR9715741	Leaf	17.378
SRR9715739	Root	22.033
SRR9715742	Root	25.434
SRR9715743	Root	26.606

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	28.833
SRR8749028	MeJA induced 9h	32.812
SRR8749029	MeJA induced 9h	24.515
SRR8749030	Uninduced	22.171
SRR8749031	Uninduced	11.487
SRR8749032	Uninduced	11.196

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	35.231
SRR8400027	Control - Root	37.353