Gene detail information of Glyur000111s00011048 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G55060.1 | 0 | |
| NR | XP_003530753.1 | 0 | PREDICTED: rab3 GTPase-activating protein catalytic subunit-like isoform X1 [Glycine max] |
| trEMBL | tr|K7LA63|K7LA63_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA08G43140.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00111 | 129034 | 135883 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000111s00011048.1 | PF13890.1 | Rab3-GTPase_cat | 369 | 527 | 3.60E-52 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.946 |
| SRR1783600 | control | 3.969 |
| SRR1783602 | moderate drought stress | 4.904 |
| SRR1811619 | moderate drought stress | 4.884 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 5.957 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 6.338 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 6.096 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 6.158 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 7.688 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 8.188 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 5.257 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 5.290 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 11.117 |
| SRR2868004 | Drought Stress (root) | 14.536 |
| SRR2967015 | Control (root) | 16.289 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 7.481 |
| SRR9715740 | Leaf | 7.450 |
| SRR9715741 | Leaf | 10.904 |
| SRR9715739 | Root | 3.898 |
| SRR9715742 | Root | 7.317 |
| SRR9715743 | Root | 7.383 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 6.980 |
| SRR8749028 | MeJA induced 9h | 28.304 |
| SRR8749029 | MeJA induced 9h | 18.121 |
| SRR8749030 | Uninduced | 13.511 |
| SRR8749031 | Uninduced | 10.097 |
| SRR8749032 | Uninduced | 16.033 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 8.467 |
| SRR8400027 | Control - Root | 8.215 |