Gene detail information of Glyur000111s00011040 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G46540.1 | 5.00E-54 | ENTH/VHS family protein |
| NR | XP_003552701.1 | 3.90E-132 | PREDICTED: clathrin interactor 1-like [Glycine max] |
| Swissprot | tr|Q67YI9|EPN2_ARATH | 1.00E-14 | Clathrin interactor EPSIN 2 |
| trEMBL | tr|K7MVE1|K7MVE1_SOYBN | 2.00E-132 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA18G52800.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00111 | 68165 | 69671 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000111s00011040.1 | PF01417.15 | ENTH | 32 | 155 | 1.60E-27 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.106 |
| SRR1783600 | control | 0.137 |
| SRR1783602 | moderate drought stress | 0.000 |
| SRR1811619 | moderate drought stress | 0.047 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.268 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.132 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.273 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.309 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.344 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.445 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 20.317 |
| SRR2868004 | Drought Stress (root) | 24.477 |
| SRR2967015 | Control (root) | 23.782 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.083 |
| SRR9715740 | Leaf | 0.003 |
| SRR9715741 | Leaf | 0.000 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.000 |
| SRR9715743 | Root | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.197 |
| SRR8749028 | MeJA induced 9h | 5.211 |
| SRR8749029 | MeJA induced 9h | 0.549 |
| SRR8749030 | Uninduced | 8.648 |
| SRR8749031 | Uninduced | 9.697 |
| SRR8749032 | Uninduced | 8.247 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 1.636 |
| SRR8400027 | Control - Root | 0.477 |