Gene detail information of Glyur000111s00011037.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G55430.1 | 2.00E-137 | O-Glycosyl hydrolases family 17 protein |
| NR | XP_004516968.1 | 0 | PREDICTED: glucan endo-1,3-beta-glucosidase-like [Cicer arietinum] |
| Swissprot | tr|P52409|E13B_WHEAT | 5.00E-143 | Glucan endo-1,3-beta-glucosidase (Precursor) |
| trEMBL | tr|Q9M4A9|Q9M4A9_PEA | 0 | Beta-1,3 glucanase {ECO:0000313|EMBL:CAB85903.1} (Precursor) |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00111 | 43022 | 47446 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GH17,CBM43 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000111s00011037.1 | PF00332.13 | Glyco_hydro_17 | 26 | 337 | 1.00E-87 |
| Glyur000111s00011037.1 | PF07983.8 | X8 | 371 | 440 | 4.00E-16 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 112.344 |
| SRR1783600 | control | 113.079 |
| SRR1783602 | moderate drought stress | 44.939 |
| SRR1811619 | moderate drought stress | 46.118 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 240.077 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 235.612 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 75.906 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 73.680 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 561.964 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 563.245 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 34.873 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 33.890 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 124.131 |
| SRR2868004 | Drought Stress (root) | 74.305 |
| SRR2967015 | Control (root) | 72.919 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 315.600 |
| SRR9715740 | Leaf | 70.300 |
| SRR9715741 | Leaf | 263.853 |
| SRR9715739 | Root | 250.728 |
| SRR9715742 | Root | 685.480 |
| SRR9715743 | Root | 568.911 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 769.639 |
| SRR8749028 | MeJA induced 9h | 1102.146 |
| SRR8749029 | MeJA induced 9h | 1491.556 |
| SRR8749030 | Uninduced | 413.884 |
| SRR8749031 | Uninduced | 1465.435 |
| SRR8749032 | Uninduced | 1937.481 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 109.116 |
| SRR8400027 | Control - Root | 211.987 |