Gene detail

Gene detail information of Glyur000110s00011797

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G10330.1	3.00E-156	Cyclin-like family protein
NR	XP_004516731.1	0	PREDICTED: transcription initiation factor IIB-like [Cicer arietinum]
COG	NP_070128.1	2.00E-46	transcription initiation factor IIB [Archaeoglobus fulgidus DSM 4304]
Swissprot	tr\|P48513\|TF2B_SOYBN	0	Transcription initiation factor IIB
trEMBL	tr\|M5VR75\|M5VR75_PRUPE	0	Uncharacterized protein {ECO:0000313\|EMBL:EMJ03476.1}

Sequence

Transcript Sequence

>Glyur000110s00011797.1
CTTAACTCCGAAGCTTCGGTAAACTTAACTCCGAAGCACCAGTCTTGTCCNTATAAATACCGAAACCGCTGGGAATTTCGTCATCTTCACCACAGTCTCTGCGCAAAACGAGTAAGAAAAAGAGGAAAATGTCGGACGCGTTTTGCAGCGATTGCAAGCGAGAGACGGAGGTGGTGGTCGACCACGCGGCGGGTGACACGGTGTGTTCGGAATGCGGCCTTGTGCTCGANTCCCACTCCATCGACGAGGGCTCCGAGTGGCGTATCTTCGCCAACGAGTCCAACGACAACGATCCCGTCCGTGTCGGTGGCCCCACCAACCCCCTCCTCACCGACGGTGGCCTCTCCACCGTCATCGCCAAGCCCAACGGTTCCTCCGGCGAGTTCCTCTCCTCCTCCCTCGGCCGCTGGCAGAACCGCGGCTCTAACCCCGACCGTGGCCTCATCCTCGCCTTCAAGACCATCGCCACCATGTCCGATAGGTTGGGACTCGTTGCAACCATCAAGGATCGGGCAAATGAGATATATAAGAGGGTTGAAGACCAAAAGTCTAGTAGAGGAAGAAATCAAGATGCCTTATTGGCTGCTTGTCTCTACATTGCTTGCCGACAAGAAGACAAACCGCGTACTGTAAAGGAAATTTGCTCCGTTGCCAATGGGGCCACAAAGAAGGAAATTGGCCGAGCAAAAGAATACATAGTGAAACAACTGGGTTTGGAGAAGGGTCAGTCTGTAGAGATGGGTACAATACATGCTGGGGACTTTATGAGGCGATTCTGTTCCAATCTTGGTATGAATAATCAAGCTGTTAAAGCTGCTCAGGAAGCTGTGAAGAAATCGGAAGAGTTTGATATAAGGAGGAGTCCTATATCAATTGCTGCTGCAGTGATATACATCATAACTCAACTTTCTGATGATAAAAAACCTCTCAAAGATATATCACTTGCCACAGGAGTTGCAGAAGGAACCATTAGGAACTCCTACAAAGATCTTTACCCCCATGTTTCAAAAATAATACCAAGTTGGTATGCTAAGGAGGAGGATTTGAAGAACCTTTGCAGCCCTTGAATTGTAGAGCAAAACCATCCGGTATTGAACAGGTCATAACTTATATGTCATTAGAGCAATCTGTTTTGGATGCACTGAACTGTTTATTGAAAATGAAAGTGCCTGTTATGGATTGTTTTAATGTATTTTCCCGTCCTTTCCTTGCCATCATTCACACCTCCAACCTGTATAGACGGTGAACCAACCAACCTGCATCAATTGAGTTATCTTTTGCTGTCCTTGCCTCTTCTTAATATGGATTTAGTTGTAGGTCTGTAGATTGCATTTTACAAAAAATTTACCTGGTGGACCTGACTCTGCTTCAAAGTCAATTAGGCGTGGAACTGCTTGATTATTGTATATTTGTGTCCTATGCAAACGAACAATTTGGAAGAGATTCTTTCGGAAGCTATTGTACAAATCAGATTGTTAATTTACTGTGTCAATTCTGGTATCTCATGGGTAGGTAGGTTGGATTTTGAGCGTATCTTGGATTTGACCCACTCATCAAAGCTATTTGGGTTGTGTTGCATGTATTCCTTGGCTGAAGTTTTTTTTTTGTTAGCTCATTAAAAAAAGTATTACTTGACTAAAATGTCGAAGTATGAAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00110	328680	332569	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006352 DNA-templated transcription, initiation

GO:0006355 regulation of transcription, DNA-templated

molecular_function

GO:0008270 zinc ion binding

GO:0017025 TBP-class protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000110s00011797.1	PF08271.7	TF_Zn_Ribbon	6	47	1.60E-13
Glyur000110s00011797.1	PF00382.14	TFIIB	112	176	1.80E-19
Glyur000110s00011797.1	PF00382.14	TFIIB	213	281	1.10E-08

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	37.595
SRR1783600	control	37.747
SRR1783602	moderate drought stress	28.241
SRR1811619	moderate drought stress	27.894

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	49.896
DRR006520	Root Summer glycyrrhizin high producing strain	48.597
DRR006521	Root Winter glycyrrhizin high producing strain	21.955
DRR006522	Root Winter glycyrrhizin high producing strain	21.404
DRR006523	Root Summer glycyrrhizin low producing strain	54.101
DRR006524	Root Summer glycyrrhizin low producing strain	53.749
DRR006525	Leaf Summer glycyrrhizin high producing strain	20.388
DRR006526	Leaf Summer glycyrrhizin high producing strain	20.345

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	32.484
SRR2868004	Drought Stress (root)	37.172
SRR2967015	Control (root)	29.523

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	36.921
SRR9715740	Leaf	20.703
SRR9715741	Leaf	34.718
SRR9715739	Root	37.096
SRR9715742	Root	49.863
SRR9715743	Root	44.488

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	143.103
SRR8749028	MeJA induced 9h	111.324
SRR8749029	MeJA induced 9h	140.910
SRR8749030	Uninduced	59.515
SRR8749031	Uninduced	38.432
SRR8749032	Uninduced	59.464

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	24.252
SRR8400027	Control - Root	33.270