Gene detail

Gene detail information of Glyur000110s00011789

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT4G23540.1	ARM repeat superfamily protein
NR	KEH41642.1	RRP12-like protein [Medicago truncatula]
trEMBL	tr\|A0A072VIJ0\|A0A072VIJ0_MEDTR	RRP12-like protein {ECO:0000313\|EMBL:KEH41642.1}

Sequence

Transcript Sequence

>Glyur000110s00011789.1
TTGTGCCTTGCGAGTGTAAAGGCATAAACCCCTAAAACGGTTAAACCCTTCACGACCTCTTCNCCGTCGTTTCGTTCCCTTCCACACTCACCGGCCGAGAGGAGCTAAGGGACCAACCAACCATCGAAGCAACTCGAACCGGTTCGAATACCATGGAAGAAGACCACACGGAGCATTTCAAGGACGGTTCGGACCTCTGCCAGCAGCTCATGGACCGTTATTCCAACTCCACTGCGCCGCAGCACCGCCACCTCCTCGCCGCCGCTGCCGCCCTGCGCGCCAACCTCTNGGCCGAGTCCCTCCCCCTCACGCCGCCCGCCTACTTCGCCGCCGCCATCTCCACCGCCGCGTCGTCTGAGGAGCTGGACCCCGTGTCCCTCTCCTCGCTCGCGTCCTTCATGTCCATCGCCCTCCCCCTAGTGCCGCCCGGCGCCATTGCCGCGGTGAAGGCGCACGAGGCTGCAGGAGTCATGGTGGCGCTGCTGGCGAGGGAGGGGGAGGGGTTGGGCGTCTCCACCTTGAAGGCCGCGGTGAAGTGCGTTGGAGTTTTGATTGGGTTTTGTGACTTGGAGGATTGGGATTCCATCAAATTAGGCTTTGAAACGTTGCTCAAGTTCTCCATTGACAAGCGCCCAAAGGAAGCTAGCAAGTTGGTTTTGTCGGAGCTGAAGAGTTGTATTGATTTGACAATGAAATTAATTGCTTCTAGGACTGTTGACGAAAATAAGGATAACGGGAGTTTGAAACAAGATCACCNGGAAGTCCTACATGTACTAAACGTGGTCAATCTGACTGCTCCTAATCTTTCTGCAAAAGTCNTTCCGAAGGTTCTTTGTGAAGTGCATAAATTATTTGGTTCTCAGTTCTCACCACTTACAAGGCACGTTCTTAAAACTATTGAGGCTACTTTTGAAGCTTCGAGAGTCCGAAATATAGCCCTTGAGACAGAGGGTATTGTAGTGTCTCTTGCTTCTTTTGTATCTTTGGGAGATAAGAACCCATTGGATACTGTGATTTTTGCAGCAAAATTATTAAGACTTGCAATGGACTTGCTTTATGCTGGACAATTAACCTTGTGGATCAAGAATCTTCCTCTAGTTTGTAGATCTGTAATGGGTCTTCTAACTTCTGAGGGAAACACTGCATCCCAGGCTTCAAGTATTTTGAATGATGTGCTCAAGCATCGTGTTGGTCCCCAAAGCTTATTAATCGGTACAGATCAAACATTTCACGAGAATAGTCAGCAAAGTGCGGAAGGCAATGCAATACAATCAACATGTGCAGTTTTTGAGAATGCCCTTTCTGCTACCGATGGAATTCCAAATGAGCATGTTCTGTCAGTCATATCTGTTTTATTTCTTGAGCTTGGAGAATTCTCATTTGTATTTATGAGGAATATTGTGCTTAGACTTGCTGACTCGATGATTCAAATTTNTGAAGGCAAGGTTAACAATGAGCATCTTCAGAAATGCATTGGGTCTGCTGTTTTTGCTATGGGACCAGAGAAATTTCTCANACTTGTACCTATCTCTCTTAATGAAAATAGCTATACTTATTCNAATATTTGGCTAGTACCAATCTTGAAGCGCTATATGACTGGAGCATCACTTGCTTACTACATGGAGAATATCATGCCTCTTGCAAAGTCCTTTAAGAAGGCTAGTGGTAAAGCAAAAAAGTCANGGATTAGTCAAGATCTGCTGGCTTGTGCCCATGAACTGTGGGGATTGCTGCCCAGTTTTTGTCGTCATGCAACTGATACAAATCAAAATTTTACTCGTCTCTGTGATGTCCTTGTTACATTTCTTNAAAAGGACCCTGCCATGCATGAAAATGTTTCAACGGCAATACAGATTCTTGTGAACGAGAACAAGGCTGCACTTAGCCCCAAAAAGAACGAGTCAGATTGCCATGCAGAACTTNATTCTTCATTTGAGCTTGGCATGCAACCTGCTTATTCAAAGAAAGCTGCTACCAGAAACATAAAGTCTTTGGCATCTTGTTCAAATCAATTGCTTCATATTTTATCAGATTTATTTTTCAGTGCACTTCCACAAATGCGCATTTCTTTAAAGGGTGCAATCAGGTGTCTAGCTTCTATCACTGATTCTTCTGNAACCAAAGAGGTTCTAATGTCTCTGCTTAAGAGGTTTCAGTTTGTAGATTGTGAAGGTGAATCTGATTTATTGACTAGTAACAGCAAAGCATTAGACAGTGNACCAAGTGATGAGAAGGGATGTTCTCAGAGGTGTCTGATGTTGGAGATAGCATCTTGTTTTGTTGAAGGAGCCAATGATAGTCTTGTTGAGATGATTTATAATTTAACTATACATTCTTTTCAGGTAATTAATGAGAGTGTTCATCATGAAGCATACAACACTTTGAGTAAAATTTTGGAGGAGCACCCATGCTTTTCTTCAAAATACATGGAGCTAATTGATTTATTACTTGGTCTAAAACCTCCAACTGCTATTGAATCTCTTAGAAGTCGGTTTGCTTGTTTTCACATGCTGATGGTACACATAGTGAAGATTAGTTTAGAAGAGGAGGAGAACTCGAAGGCTTTTCTCATTCTCAATGAAATCATTCTCACATTAAAAGATGGAAATGGTGAAGCTAGGAAAGAAGCTTGTGATTTNCTCTTAAATATAAGTTCTAGCTTGAGAGACCTATCATGTGCTGGTCCTGTTGAGCCATATCACAAGCTAGTTAGCATGATAATGGGGTATCTTTCTGGTTCATCTCCCCATATAAAAAGCGGAGCAGTGTCTGCACTATCTGTATTGGTATATAAGGATACAAATCTTTGTCTCTCCATTTCTGATCTTGTCCCTTCTCTTTTATCTTTGCTGCGAACCAAAGATGTGGAAATCATAAAAGCTGTCTTGGGCTTTGTTAAAGTGATGGTATCTTGCTTNGAAGCAAAGGAATTGCAGAGTATTCTCTCAGATGTTGTAACTGAAATCTTCCCCTGGTCGTCTGTTTCAAGACATCATTTTAGATCAAAGGCATGTATAANTTATAATATTAAGCTCCAGTCCGAAACATGCATGGTCACTGTTATATTTGAAATATTAATACGGAAGTGTGGTTCTGCTGCTGTCAGAGTGGTTACACCAGAGCAGTACAAGAGTTTTCTCAAGACAGTTCTAGAGAATCGCCATGGCAAATCAAGTGAAGCAGTCGCCAATGATACAGAAGATATGCCTGAAGATTCATCTGCCAGGGGGCCAGATTGGAGGAAACGCAAAAGTTCAGATACCCAAGATTCGGCTAAACTGAAAAAGAGAAAGGAGAAGAAATTTGAGACAGACTTGCCAAGCAAAAACAAACCAATCAAGTCTATCAGCAATAATGAATTCAGATTAGCCAAGAGAAGTAGGCATTTTAATTCCAATGATAAAAATTCAAATGTACGGAATTCAGGAGGAAGTGAAAAGGGTAAGAAAAGCCCGTACAAAAGTTTCACTGAAGGTGGTTGGAAGGGAAAGGGAAAGATGGCAAGTAGGGATAAGGATAAAGCAGCTTCCAAATCACCTAAATTAAAAAGGAATTTCAAAAGAAATTGATAGCTGGGATAACAAGGTGTAGAAGCAGGACTCTATTTGTGTTTCCTGCTGAATAAGCAAGCATTATAGAGAGGAAGTTACTTGGGCGCTTTTGTCAACGAGCTGAGAAAATGAAAGGCTGCTTACTGCATGCATATTCTCGGGGGAAGAAAGTTAAGAGCGTGGTGAGGAACGTTGTTATCGCAGTGGATGACTGGCCTTGGTTGATTCTTATATATGTGGCTGTATATTGCCATCTTTTGCCCTCTGCAGGATTTTCCCCGAACTGCTACTTTATATAGTTAAATACTGATTTCTCATAATAGGTATTTGTCTTCAGACTTGTGGTCAGTTGGTATGTTGAAAGCAA

Protein Sequence

>Glyur000110s00011789.1
MEEDHTEHFKDGSDLCQQLMDRYSNSTAPQHRHLLAAAAALRANLXAESLPLTPPAYFAAAISTAASSEELDPVSLSSLASFMSIALPLVPPGAIAAVKAHEAAGVMVALLAREGEGLGVSTLKAAVKCVGVLIGFCDLEDWDSIKLGFETLLKFSIDKRPKEASKLVLSELKSCIDLTMKLIASRTVDENKDNGSLKQDHXEVLHVLNVVNLTAPNLSAKVXPKVLCEVHKLFGSQFSPLTRHVLKTIEATFEASRVRNIALETEGIVVSLASFVSLGDKNPLDTVIFAAKLLRLAMDLLYAGQLTLWIKNLPLVCRSVMGLLTSEGNTASQASSILNDVLKHRVGPQSLLIGTDQTFHENSQQSAEGNAIQSTCAVFENALSATDGIPNEHVLSVISVLFLELGEFSFVFMRNIVLRLADSMIQIXEGKVNNEHLQKCIGSAVFAMGPEKFLXLVPISLNENSYTYSNIWLVPILKRYMTGASLAYYMENIMPLAKSFKKASGKAKKSXISQDLLACAHELWGLLPSFCRHATDTNQNFTRLCDVLVTFLXKDPAMHENVSTAIQILVNENKAALSPKKNESDCHAELXSSFELGMQPAYSKKAATRNIKSLASCSNQLLHILSDLFFSALPQMRISLKGAIRCLASITDSSXTKEVLMSLLKRFQFVDCEGESDLLTSNSKALDSXPSDEKGCSQRCLMLEIASCFVEGANDSLVEMIYNLTIHSFQVINESVHHEAYNTLSKILEEHPCFSSKYMELIDLLLGLKPPTAIESLRSRFACFHMLMVHIVKISLEEEENSKAFLILNEIILTLKDGNGEARKEACDXLLNISSSLRDLSCAGPVEPYHKLVSMIMGYLSGSSPHIKSGAVSALSVLVYKDTNLCLSISDLVPSLLSLLRTKDVEIIKAVLGFVKVMVSCXEAKELQSILSDVVTEIFPWSSVSRHHFRSKACIXYNIKLQSETCMVTVIFEILIRKCGSAAVRVVTPEQYKSFLKTVLENRHGKSSEAVANDTEDMPEDSSARGPDWRKRKSSDTQDSAKLKKRKEKKFETDLPSKNKPIKSISNNEFRLAKRSRHFNSNDKNSNVRNSGGSEKGKKSPYKSFTEGGWKGKGKMASRDKDKAASKSPKLKRNFKRN

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00110	281548	291782	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005488 binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000110s00011789.1	PF08161.7	NUC173	376	570	1.10E-39
Glyur000110s00011789.2	PF08161.7	NUC173	376	570	1.10E-39

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	4.287
SRR1783600	control	4.246
SRR1783602	moderate drought stress	7.674
SRR1811619	moderate drought stress	7.734

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	6.241
DRR006520	Root Summer glycyrrhizin high producing strain	6.250
DRR006521	Root Winter glycyrrhizin high producing strain	3.063
DRR006522	Root Winter glycyrrhizin high producing strain	2.883
DRR006523	Root Summer glycyrrhizin low producing strain	6.648
DRR006524	Root Summer glycyrrhizin low producing strain	6.651
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.801
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.791

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	6.351
SRR2868004	Drought Stress (root)	4.387
SRR2967015	Control (root)	5.191

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.504
SRR9715740	Leaf	3.663
SRR9715741	Leaf	2.105
SRR9715739	Root	0.509
SRR9715742	Root	6.977
SRR9715743	Root	5.315

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	8.035
SRR8749028	MeJA induced 9h	7.039
SRR8749029	MeJA induced 9h	5.528
SRR8749030	Uninduced	0.688
SRR8749031	Uninduced	0.770
SRR8749032	Uninduced	1.091

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	9.917
SRR8400027	Control - Root	9.340