Gene detail

Gene detail information of Glyur000110s00011783.1

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT5G13630.1	magnesium-chelatase subunit chlH, chloroplast, putative / Mg-protoporphyrin IX chelatase, putative (CHLH)
NR	KHN13947.1	Magnesium-chelatase subunit H [Glycine soja]
COG	YP_001866414.1	magnesium chelatase subunit H [Nostoc punctiforme PCC 73102]
Swissprot	tr\|Q9FNB0\|CHLH_ARATH	Magnesium-chelatase subunit ChlH, chloroplastic (Precursor)
trEMBL	tr\|I1LAA1\|I1LAA1_SOYBN	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA10G20570.1}

Sequence

Transcript Sequence

>Glyur000110s00011783.1
CCACTAACCATATAAACCGTTTCAATTCACAGACCCTCTTCTTCTCTCTCCACACATACCAAATAAAACCTCATAGCCATTCATCTATACAAAGGAGAAAAGAAGAGAAAAGGAACACAAGATACACTTTGAACTGAGTTGAGAAACACTCAACTTTAGTTTTAAGAAAAAAAAAATCATAAAGTGTANAAATTCCTCAAACCCCATCTCTTTCTCATTTGTTTCTCTTCTCTTTTCTTAGTAATTAACTTGAAAAGAGAAGATTTTTATCTCTCTTTTGTACAGGGGTTGATGATCAATGGCTTCTTTAGTATCATCCCCATTTACTCTATCTAGTTCTAAAGCTGATCAACTTTCTTCCCTTTCTCAAAGACACCTTTTTCTTCATTCTTTCCTTCCAAAGAAGGCCAATTGCTATAACAGCTCAACAAAGTCTTCGCTGAGACCAGTGAAGTGTGCTGCAATTGGGAATGGCCTTTTCACCCAAACCACCCAAGAAGTTCGTAGGATAGTTCCAGAGAACAGCCAAAACCTTCCAACAGTTAAGGTTGTTTATGTTGTCCTTGAAGCTCAGTACCAGTCATCACTCTCAGCTGCTGTTAGAGCCCTCAACAGTACCAACAAAGATGTTTCCTTTGAGGTTGTTGGTTACTTGGTGGAGGAGCTTCGTGATGAGTCCACTTATAAGANTTTTTGCAAGGATTTGGAAGATGCCAACATCTTCATTGGGTCTTTGATCTTTGTGGAGGAGCTAGCACTCAAGGTTAAGGATGCTGTGGAGAAAGAAAGGGACAGGCTTGATGCAGTCCTTGTGTTCCCATCAATGCCTGAGGTAATGAGGCTGAACAAGTTGGGGTCCTTCAGCATGTCACAGCTTGGACAATCCAAGAGCCCCTTTTTCCAGCTCTTCAAAAAGAAGAAGCAGTCTTCTGCTGGCTTTGCTGATAGCATGTTGAAGCTGGTGAGGACTTTGCCTAAGGTTTTGAAGTATTTGCCAAGTGATAAGGCTCAGGATGCTAGACTTTACATCCTGAGCCTGCAGTTTTGGCTTGGTGGATCACCTGATAATCTGCAGAACTTTTTGAAAATGATTTCTGGGTCTTATGTTCCGGCGCTGAAAGGGACAAAGATGGAGTATTCGGAACCGGTTTTGTACTTGGACAGTGGGATTTGGCACCCTCTTGCACCTTGTATGTATGATGATGTGAAGGAGTATCTGAATTGGTATGGAACTAGGAGGGATGCTAATGAGAAGCTGAAGAGTCCGAATGCGCCGGTGATCGGTCTGATTTTGCAAAGGAGTCATATTGTTACCGGTGATGAGGGTCATTATGTGGCTGTGATCATGGAACTTGAGGCTAAAGGGGCTAAGGTCATTCCGATTTTCGCCGGGGGGCTTGACTTTTCNGGGCCAGTGGAGAGGTTCTTGATTGATCCAATCACTAAGAAACCGTTTATAAATTCCGTGATATCGCTCACCGGCTTNGCTCTTGTTGGAGGCCCTGCAAGGCAGGACCATCCGAGGGCAGTTGAGGCTTTGATGAAGCTTGATGTTCCTTACATTGTTGCATTGCCACTGGTGTTCCAGACAACAGAAGAGTGGCTGAACAGTACTTTGGGTTTGCATCCAATTCAGGTTGCTCTTCAAGTTGCACTGCCTGAGCTAGATGGAGGGATGGAACCAATTGTTTTTGCTGGTCGTGATCCCAAAACAGGAAAATCTCATGCTCTTCACAAGAGAGTGGAGCAGCTCTGCACCAGGGCAATCAGATGGGCTGAATTGAAAAGAAAGTCAAAGGAAGAGAAGAGACTAGCAATCACTGTCTTCAGTTTCCCACCAGACAAAGGAAATGTAGGAACTGCTGCCTACCTGAACGTCTTCTCCTCCATTTTCTCTGTTTTAAAAGAACTCCAAAGAGANGGTTACAATTGCGAGGGTCTTCCAGAGACTTCAGAAGAATTGATTGAAGAGGTAATACATGACAAAGAAGCGCAATTCAGCAGCCCNAATTTGAATGTTGCTTACAAAATGGGTGTCCGCGAATATCAAAGTCTCACTCCCTATGCCACAGCATTAGAAGAGAATTGGGGAAAGCCTCCTGGGAATCTGAATGCAGATGGAGAGAATCTATTGGTATATGGGAAACAATATGGTAATGTATTCATAGGGGTTCAACCCACATTTGGATATGAAGGCGATCCCATGCGGTTGCTTTTCTCCAAATCTGCAAGCCCACATCATGGTTTTGCAGCATATTACTCTTTTGTTGAGAAAATCTTCAAAGCCGATGCTGTTCTTCATTTCGGGACACACGGTTCCCTTGAATTCATGCCTGGAAAGCAGGTCGGGATGAGTGATGTATGTTACCCTGACAGTCTGATTGGGAATATTCCCAATGTCTATTACTATGCTGCTAACAACCCTTCTGAGGCTACCATAGCCAAACGCAGGAGCTATGCGAATACCATCAGCTATCTGACTCCTCCGGCAGAAAATGCAGGACTGTACAAAGGTCTTAAGCAGTTAAGTGAGCTCATCTCCTCATACCAGTCCCTCAAGGACACTGGCCGTGGGCAACAAATTGTGAGTTCAATTATCAGCACAGCTAAACAGTGTAATCTTGACAAGGATGTGGAACTTCCAGATGAGGGTGTAGAGCTCCCAGCTAAAGAGCGTGACCTTGTTGTCGGGAAGGTGTATTCCAAGATCATGGAGATCGAGTCCCGCCTGTTGCCTTGTGGACTCCATGTCATCGGTGAGCCACCCTCAGCCATGGAAGCAGTTGCTACCCTAGTGAACATAGCTGCACTCGATCGTCCTGAAGACGGTATTTCCTCCCTCCCTTCTATACTAGCTGAGACTGTAGGAAGAAACATAGAGGATGTTTATAGATCTAGTGACAAGGGAATACTAAAGGATGTAGAGCTTCTTCGACAAATAACTGAAGCATCACGCGGAGCAATTACTTCCTTTGTGGAGCGCACTACTAANGATAAGGGTCAAGTTGTTGATGTAAAAGATAAACTAAGCTCGATTCTTGGATTTGGCATAAATGAACCATGGGTTCAGTACTTGTCGAACACCAAATTTTACCGAGCTGATAGGGAAAAACTCAGAACTTTGTTTGAGTTCTTGGGAGAATGTTTGAAGTTGGTCGTAGCTAATAACGAAGTGGGAAGCTTAAAACAAGCCTTGGAGGGTAAATATGTTGAGCCAGGACCTGGAGGTGACCCAATTAGAAACCCTAAAGTTTTACCAACAGGAAAGAATATCCATGCCCTGGACCCACAAGCCATTCCTACTACGGCAGCGATGCAGAGTGCCAAAGTAGTGGTAGAGAGATTGATTGAGAGGCAAAAGGCTGAGAATGGGGGAAAGTATCCTGAGACAATTGCACTTGTACTGTGGGGAACAGATAACATTAAGACATATGGGGAGTCCCTGGCTCAGGTCTTGTGGATGATTGGTGTGAACCCAATAGCCGATACCTTTGGAAGGGTCAACCGGGTAGAACCTGTAAGCCTTGAAGAGCTTGGAAGGCCTAGAATTGATGTCGTCGTCAATTGCTCCGGAGTATTCAGAGACCTTTTTATCAATCAGATGAATCTTCTGGATAGAGCAGTGAAGATGGTTGCTGAATTGGATGAACCCGCAGAGCAGAACTTTGTAAGGAAGCATGCATTGGAACAAGCTCAAGCCCTTGGGATTGAAGTTCGAGAAGCGGCAACAAGGGTCTTCTCCAATGCCTCAGGGTCCTACTCTTCAAACATAAACCTGGCCGTGGAGAATTCTTCATGGAATGACGAGAAGCAGCTCCAGGACATGTANCTTAGCCGTAAGTCTTTCGCTTTTGACTGCGATGCCCCTGGTGCAGGCATGACCGAGAAAAGAAAAGTCTTTGAGATGGCTCTGAGCACAGCAGACGCCACGTTCCAAAACCTCGACTCATCAGAAATCTCCCTCACTGATGTCAGTCATTACTTTGACTCAGACCCAACAAACCTGGTTCAAAATCTAAGGAAAGATGGGAAGAAGCCAAGTGCATACATTGCTGACACAACCACAGCTAATGCCCAGGTACGTACCCTTTCCGAGACCGTCCGACTTGATGCAAGAACCAAGCTGTTGAATCCCAAGTGGTATGAAGGCATGTTGTCTAGTGGCTACGAGGGTGTCCGCGAGATCGAGAAGAGGCTTACCAACACAGTTGGATGGAGTGCAACTTCTGGCCAAGTTGACAACTGGGTGTATGAAGAAGCCAACACAACTTTCATTCAAGATGAGGAGATGCTGAAGAAGCTCATGAACACAAACCCCAACTCCTTCAGGAAGCTGGTGCAGACATTCTTGGAAGCCAACGGGCGCGGATATTGGGAGACTTCGGAACAGAACATTGAGAAACTCAGGCAGTTGTACTCAGAAGTGGAAGACAAAATTGAAGGCATTGATCGTTGAAGTATACAGAGACATTAACTGCTGATATAACTGTATCTTCTTTGTCTCTGAAGCTTCCTTCTCCTTCTCCTTCCCACGTGGAATTGATGTTGTTGACAATGGCATCCTTTTTCATGTGATTTTGTTCTCCTCTTCTCTTTTTCCCTGTTGTAATTTTTAATCCATTTTCAGGGACCATGTTCCTTTGTGCAGTTGTTAGTGCCAAACTCAACTTGGCCAATATAGCTTCCAGTTTTCCAAAATATAAACAAATGATTCCCTTGTATTGATTGCTCATGTTATCA

Protein Sequence

>Glyur000110s00011783.1
MASLVSSPFTLSSSKADQLSSLSQRHLFLHSFLPKKANCYNSSTKSSLRPVKCAAIGNGLFTQTTQEVRRIVPENSQNLPTVKVVYVVLEAQYQSSLSAAVRALNSTNKDVSFEVVGYLVEELRDESTYKXFCKDLEDANIFIGSLIFVEELALKVKDAVEKERDRLDAVLVFPSMPEVMRLNKLGSFSMSQLGQSKSPFFQLFKKKKQSSAGFADSMLKLVRTLPKVLKYLPSDKAQDARLYILSLQFWLGGSPDNLQNFLKMISGSYVPALKGTKMEYSEPVLYLDSGIWHPLAPCMYDDVKEYLNWYGTRRDANEKLKSPNAPVIGLILQRSHIVTGDEGHYVAVIMELEAKGAKVIPIFAGGLDFSGPVERFLIDPITKKPFINSVISLTGXALVGGPARQDHPRAVEALMKLDVPYIVALPLVFQTTEEWLNSTLGLHPIQVALQVALPELDGGMEPIVFAGRDPKTGKSHALHKRVEQLCTRAIRWAELKRKSKEEKRLAITVFSFPPDKGNVGTAAYLNVFSSIFSVLKELQRXGYNCEGLPETSEELIEEVIHDKEAQFSSPNLNVAYKMGVREYQSLTPYATALEENWGKPPGNLNADGENLLVYGKQYGNVFIGVQPTFGYEGDPMRLLFSKSASPHHGFAAYYSFVEKIFKADAVLHFGTHGSLEFMPGKQVGMSDVCYPDSLIGNIPNVYYYAANNPSEATIAKRRSYANTISYLTPPAENAGLYKGLKQLSELISSYQSLKDTGRGQQIVSSIISTAKQCNLDKDVELPDEGVELPAKERDLVVGKVYSKIMEIESRLLPCGLHVIGEPPSAMEAVATLVNIAALDRPEDGISSLPSILAETVGRNIEDVYRSSDKGILKDVELLRQITEASRGAITSFVERTTXDKGQVVDVKDKLSSILGFGINEPWVQYLSNTKFYRADREKLRTLFEFLGECLKLVVANNEVGSLKQALEGKYVEPGPGGDPIRNPKVLPTGKNIHALDPQAIPTTAAMQSAKVVVERLIERQKAENGGKYPETIALVLWGTDNIKTYGESLAQVLWMIGVNPIADTFGRVNRVEPVSLEELGRPRIDVVVNCSGVFRDLFINQMNLLDRAVKMVAELDEPAEQNFVRKHALEQAQALGIEVREAATRVFSNASGSYSSNINLAVENSSWNDEKQLQDMXLSRKSFAFDCDAPGAGMTEKRKVFEMALSTADATFQNLDSSEISLTDVSHYFDSDPTNLVQNLRKDGKKPSAYIADTTTANAQVRTLSETVRLDARTKLLNPKWYEGMLSSGYEGVREIEKRLTNTVGWSATSGQVDNWVYEEANTTFIQDEEMLKKLMNTNPNSFRKLVQTFLEANGRGYWETSEQNIEKLRQLYSEVEDKIEGIDR

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00110	220081	226326	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K03403	chlH, bchH	EC:6.6.1.1	Porphyrin and chlorophyll metabolism	map00860

Gene Ontology

biological_process

GO:0009058 biosynthetic process

GO:0015995 chlorophyll biosynthetic process

molecular_function
GO:0016851 magnesium chelatase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000110s00011783.1	PF11965.3	DUF3479	82	244	1.90E-49
Glyur000110s00011783.1	PF02514.11	CobN-Mg_chel	248	1366	0

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	4.599
SRR1783600	control	4.543
SRR1783602	moderate drought stress	2.805
SRR1811619	moderate drought stress	2.810

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.330
DRR006520	Root Summer glycyrrhizin high producing strain	2.382
DRR006521	Root Winter glycyrrhizin high producing strain	4.059
DRR006522	Root Winter glycyrrhizin high producing strain	3.947
DRR006523	Root Summer glycyrrhizin low producing strain	3.192
DRR006524	Root Summer glycyrrhizin low producing strain	3.152
DRR006525	Leaf Summer glycyrrhizin high producing strain	425.621
DRR006526	Leaf Summer glycyrrhizin high producing strain	423.811

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	17.299
SRR2868004	Drought Stress (root)	21.630
SRR2967015	Control (root)	6.628

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	292.736
SRR9715740	Leaf	321.987
SRR9715741	Leaf	244.589
SRR9715739	Root	1.601
SRR9715742	Root	9.650
SRR9715743	Root	8.646

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	5.127
SRR8749028	MeJA induced 9h	4.062
SRR8749029	MeJA induced 9h	1.282
SRR8749030	Uninduced	0.677
SRR8749031	Uninduced	0.048
SRR8749032	Uninduced	0.337

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	10.487
SRR8400027	Control - Root	7.689