Gene detail

Gene detail information of Glyur000110s00011777.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G41835.1	2.00E-92	zinc finger (C2H2 type, AN1-like) family protein
NR	XP_004513765.1	2.78E-173	PREDICTED: zinc finger AN1 and C2H2 domain-containing stress-associated protein 16-like [Cicer arietinum]
Swissprot	tr\|Q0D5B9\|SAP16_ORYSJ	1.00E-122	Zinc finger AN1 and C2H2 domain-containing stress-associated protein 16
trEMBL	tr\|I1JG86\|I1JG86_SOYBN	2.00E-173	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA02G31550.2}

Sequence

Transcript Sequence

>Glyur000110s00011777.1
GTCAAAGGTCAAGCAGCAGCGGAGGACTTATCCCGACGAGACGAAGCAANGAGTTCCCAATTCCCTTTCTCCCTCAATTGAATTCCCCATTTCTTTCTCTGTTTCTATTTCTCTCCAATTTCTTTCCCTTCCGTTTCCATTTTTTTTTCCTGTGTTTGTTAGTTAGTGTTGNCATATGGGAACTCCGGAATTCCCAGATCTAGGAAAGCACTGTGCCGTCTCTCACTGCAAACTCATTGATTTCTTGCCCTTCACCTGCGATCGCTGCAACCAGGTGTATTGTTTGGAACACCGAAGTTATATTAAACATCAGTGTACAAAAGCTGACAAGTTAGATGTCACTGTGGTTATATGTCCACTTTGCGCCAAAGGAGTTCGCCTAGTCCCTGATCAAGATCCAAACATAACNTGGGAGAGTCATGTTAACACCGAGTGCGACCCGTCAAATTACGAGAGAGCCNTAAAGAAGAAGAAATGCCCTGCCCCTGGATGCAGAGAGATCTTAGTATTCTCAAACACAATCAANTGCAGGGACTGCATGNTAGACCATTGTTTGAAGCATCGGTTCGGACCNGATCATAAATGTCCGGGGCCTAAAAAGTTGGAAACAAGTTTCTCATTCATGAGTCTATTGAATAAGAAAAGAGAAGTGGTGCCTAAACCCAATTCAAGTTCTTCAGCCTCCTCATCATCATCTAAATGGACTACAAGCTTTCTTAATGCGGCTTCGAACATTCGAGCTTCAGCTGAGGCAGGCATGTCAAAGTTGAGTGCTGAAGTTAATCAAACGTGGAGGACAACAAAGGATGGTGTGGGACAAAGCAGTGGCAGTGGTCAAGTGGAGCAATGCCCTCAGTGTGGTGCCAAGTTTTCCTCAGTCACTGCTTTGGTGGACCATGTAGAAAAAGTTCATGAAAGAAGTAACAACCGTTCTGGGGTGAAGGTTACAATTGATGTTTGNCCCAAGTGTAGTAAAGGATTCAGAGACCCTGTGGCCCTTGTAGAGCATGTTGAGAGGGATCATGGTGGTACTTCTAGAGCATAGGTGTGAAGCTGATATTTGAATGAGTTTTGTACTTTCTGAAATGAATATAGCCTGGAATGAATTCAGTGT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00110	198810	201241	+

Gene family

Gene family	subfamily
Transcription Factors Family	C2H2

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0003676 nucleic acid binding

GO:0008270 zinc ion binding

GO:0046872 metal ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000110s00011777.1	PF01428.11	zf-AN1	13	52	1.70E-13
Glyur000110s00011777.1	PF13912.1	zf-C2H2_6	25	35	5.7
Glyur000110s00011777.1	PF01428.11	zf-AN1	101	142	1.70E-08
Glyur000110s00011777.1	PF13912.1	zf-C2H2_6	224	241	0.01

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	9.437
SRR1783600	control	9.528
SRR1783602	moderate drought stress	6.725
SRR1811619	moderate drought stress	6.794

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	9.525
DRR006520	Root Summer glycyrrhizin high producing strain	9.012
DRR006521	Root Winter glycyrrhizin high producing strain	6.098
DRR006522	Root Winter glycyrrhizin high producing strain	5.649
DRR006523	Root Summer glycyrrhizin low producing strain	7.280
DRR006524	Root Summer glycyrrhizin low producing strain	7.242
DRR006525	Leaf Summer glycyrrhizin high producing strain	9.756
DRR006526	Leaf Summer glycyrrhizin high producing strain	9.469

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	17.192
SRR2868004	Drought Stress (root)	19.136
SRR2967015	Control (root)	21.209

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	17.471
SRR9715740	Leaf	17.976
SRR9715741	Leaf	20.430
SRR9715739	Root	4.338
SRR9715742	Root	7.021
SRR9715743	Root	6.360

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	6.114
SRR8749028	MeJA induced 9h	6.614
SRR8749029	MeJA induced 9h	4.527
SRR8749030	Uninduced	4.786
SRR8749031	Uninduced	3.741
SRR8749032	Uninduced	3.275

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	14.519
SRR8400027	Control - Root	15.133