Gene detail

Gene detail information of Glyur000110s00011772

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G19450.2	0	calcium-dependent protein kinase 19
NR	XP_004513770.1	0	PREDICTED: calcium-dependent protein kinase 8-like [Cicer arietinum]
COG	YP_004904868.1	3.00E-24	putative serine/threonine protein kinase [Kitasatospora setae KM-6054]
Swissprot	tr\|Q42438\|CDPK8_ARATH	0	Calcium-dependent protein kinase 8
trEMBL	tr\|A0A072VTY6\|A0A072VTY6_MEDTR	0	Calmodulin-domain kinase CDPK protein {ECO:0000313\|EMBL:KEH41585.1}

Sequence

Transcript Sequence

>Glyur000110s00011772.1
ATGGGAAATTGCTGTACGACGCCGTCTGNTGTGAAGAAGAAGAAGGAGAGGAAGCCCAAGAAGGAGGANGATGGGCCTGNGGGGAAGAAAAAGCTGGTGGTTTTNAAGGAGCCCACGGGCCGTGAGATCGGGCTTCGATACGAACTGGGCCGTGAATTGGGCCGAGGGGAGTTCGGGGTGACGTACCTGTGCAGGAACAAGGAGAGCGGGGAGGAGCTTGCGTGCAAGTCGATATCGAAGAAGAAGCTTAGGACNAATATCGATATTGAGGATGTGAGGAGGGAGGTTGAGATCATGAGGCACATGCCCAAACACTCTAACATCGTGTCGTTGAGGGATACCTATGAGGATGACGATGCCGTTCACCTCGTCATGGAGCTCTGTGAGGGCGGCGAGCTCTTTGACCGCATCATGTGCCACAAACAAGGTGTGATGCATCGGGATCTCAAGCCCGAGAACTTTTTGTTTGCAAGCAAGAAGGAAACAGCTCCTTTGAAAGCCATTGACTTTGGTTTGTCAGTTTTCTTTAAACCAGGTGAAAAATTTAATGAGATAGTTGGAAGTCCATATTACATGGCCCCTGAGGTATTAAAGCGAAATTATGGCCCTGAAGTTGATATCTGGAGTGCTGGAGTCATTCTTTACATCTTACTCTGTGGTGTCCCTCCTTTTTGGGCAGAGACTGAACAGGGAGTTGCTCAAGCAATTATACGATCTGTTGTTGACTTTAAGAGGGAGCCATGGCCAAGGGTTTCTGATAATGCAAAAGACCTTGTGAAGAAGATGCTTGATCCTGATCCAAAGCGCCGGCTTACTGCACAGGAAGTGTTAGATCACCCATGGTTGCAGGATGCAAAGAAAGCTCCTAATGTTTCATTGGGAGAAACTGTCAGAGCAAGGCTCATGCAATTTTCTGTAATGAACAAGCTCAAGAAAAGAGCATTAAGGGTGATTGCAGATCATTTATCTATAGAAGAAGTTGCTGGAATAAAAGAGGGATTCCAGCTGATGGATACAGGCAATAAAGGCAAAATTGACATTGATGAGCTACGAGTAGGGTTGCATAAGCTAGGCCACCAAATTCCTGATGGAGATGTCCAAATACTTATGGAAGCTGGTGATGTAGACAAAGATGGTTACCTAGATTATGGGGAGTTTCTAGCCATTTCTATTCATTTGAGAAAGATAGGCAATGACGACCACCTTCACAAAGCCTTCCAATTTTTTGATCAAAACCAAAGTGGGTATATTGAACATGAGGAATTACGTAATGCCTTAGCTGATGAGATTGATACTGACAGTGAAGAGGTCATTAATGCAATTATGCATGATGTGGACACAGATAAGGATGGAAGAATAAGTTATGAGGAATTTGCTGCAATGATGAAGGCGGGCACAGATTGGAGAAAAGCATCAAGGCAATATTCACGAGAGAGGTTCACTAGTCTAAGCCTGAAACTGATGAAGGACGGGTCATTGCAATTAGAAAATGAAGGTAGATGACTTTAGAAAGCAAAAAAAAAAGGCTAATTTCACTGCTTCAAATGAAAGGCAAAAAAATATGATTAAAGAGGAGAAGTCGTTATCGTTTTCCTTTTTCCTTCATTGTAATTCTTTTCCCTAATTTTTCTTATATATCCTTTCGAGAAAGAAAAAAAAAACCCCATTTCTGGGGTGAAAAAAAAATAGGATATGGGCCTGAGCAGTGATGTCTGCGTGGTGTGCAATTTTTTCCCCGTCCTTTTGATTTGTTGAGGTTTTGTCATTGGAGAAAGGTGATGATGGGAGGATTAACAAGTCATCGTGGCTGTAAATATTTCAAATATTCACGCCTAAATATTAATCATTATGATCTTGTGGCATTTTTACCCCAATCTTTACATTTTTGTTGCTTAAACAGNAC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00110	167069	171335	+

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:4.2.1

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K13412	CPK	EC:2.7.11.1	Plant-pathogen interaction	map04626
			Toxoplasmosis	map05145

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0005509 calcium ion binding

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000110s00011772.1	PF00069.20	Pkinase	47	138	1.80E-19
Glyur000110s00011772.1	PF00069.20	Pkinase	139	282	3.40E-43
Glyur000110s00011772.1	PF13499.1	EF-hand_7	332	389	6.80E-10
Glyur000110s00011772.1	PF13499.1	EF-hand_7	402	462	1.70E-15

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	19.735
SRR1783600	control	19.848
SRR1783602	moderate drought stress	25.825
SRR1811619	moderate drought stress	25.372

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	21.068
DRR006520	Root Summer glycyrrhizin high producing strain	21.294
DRR006521	Root Winter glycyrrhizin high producing strain	52.233
DRR006522	Root Winter glycyrrhizin high producing strain	50.208
DRR006523	Root Summer glycyrrhizin low producing strain	38.701
DRR006524	Root Summer glycyrrhizin low producing strain	38.853
DRR006525	Leaf Summer glycyrrhizin high producing strain	19.711
DRR006526	Leaf Summer glycyrrhizin high producing strain	19.348

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	32.004
SRR2868004	Drought Stress (root)	35.081
SRR2967015	Control (root)	31.465

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	39.672
SRR9715740	Leaf	34.246
SRR9715741	Leaf	48.277
SRR9715739	Root	8.598
SRR9715742	Root	36.472
SRR9715743	Root	31.640

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	43.525
SRR8749028	MeJA induced 9h	56.439
SRR8749029	MeJA induced 9h	73.400
SRR8749030	Uninduced	88.849
SRR8749031	Uninduced	112.510
SRR8749032	Uninduced	99.239

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	44.179
SRR8400027	Control - Root	43.729