Gene detail

Gene detail information of Glyur000110s00011771

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G13650.1	0	elongation factor family protein
NR	KEH41587.1	0	GTP-binding protein TypA/BipA [Medicago truncatula]
COG	YP_001274491.1	0	GTP-binding protein TypA [Roseiflexus sp. RS-1]
Swissprot	tr\|A4RZA6\|GUFP_OSTLU	7.00E-44	Translation factor GUF1 homolog, chloroplastic {ECO:0000255\|HAMAP-Rule:MF_03138} (Precursor)
trEMBL	tr\|A0A072VID5\|A0A072VID5_MEDTR	0	GTP-binding protein TypA/BipA {ECO:0000313\|EMBL:KEH41587.1}

Sequence

Transcript Sequence

>Glyur000110s00011771.1
AAAAATGGTTATAGGGTTGTGGCAACTGGCAAGGAACACGTTGGATGATGATGTGGAATAAAGTAGGCCGCATAGGCAACAAGGGCGAAACCTTGTCGGCTATTATTTTCCCACAAACAAGTACGGTATCCATTCCTGCGCCACTAAAATCTAGCGAACTCAACCATACAAATTGACAGCCTCATACTCCTCTTTCTCCCCCTACCCAATCCCTCACTCCCCTATTCTCTTCTTCGTAACCGCAACGGCACTGAACACAGAACGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGAAAATGGCGCTGAATTTCCAAAACTCTTTCCTCTTCTCCACCACCACACTTCCACCAAAGACCTCTTCTCCACTCTTCTTCTCTAACCGTAGCCAACTCTTCGGCCTTCCCTTATCTTCTTCCAAACCAGCCCTGCGATTTCCTTCCAACAACAACACTTTTACTTGCAGGCCTATCAAATGCTCCGTTTCTGAAGTCACTGAGCCCAAAACTGAGAAGAAGAAGCAGTTGCAGAGAAGAGGAGACGTGAGAAACATTGCTATCGTTGCTCACGTTGACCACGGAAAAACTACCCTCGTTGATGCCATGCTGAGACAAACAAAGGTGTTTCGTGATAATCAATTTGTGCAGGAAAGGATAATGGACTCGAATGATTTGGAGCGTGAAAGAGGAATCACTATTCTGAGTAAAAACACGTCTGTGACATACAAAGACACGAAGATTAATATCATAGATACTCCAGGTCACTCTGATTTTGGGGGTGAAGTGGAGCGCATCTTGAATATGGTGGAAGGAATCCTATTAGTGGTAGATTCCGTTGAAGGGCCAATGCCACAGACAAGATTTGTCTTAAAGAAGGCTTTAGAGTTTGGCCATGCAGTTGTTGTGGTTGTGAATAAAATAGATAGGCCTTCTGCTCGCCCAGATTTTGTCGTCAATTCTACCTTNGAACTCTTCATTGAACTAAATGCAACAGATGAACAGTGTGACTTTCAAGTAATATATGCAAGTGGTATAAAAGGGAAAGCAGGGCTGTCTCCTGAAAATCTGGCAGATGACCTTGGGCCATTGTTTGAATCCATCATCAGATGTATCCCTGGACCACGTATTGATAAAGATGGCGCACTTCAAATGCTTGTTACGAATATCGAGTATGATGAACATAAAGGGCGTATAGCAATTGGGCGCTTGCAAGCTGGAGTTTTAGAAAAAGGCATGGATGTCAAGGTTTGTACTTCAGAAGATTCATGTAGATATGGAAGAATTAGTGAGCTTTATGTGTATGACAAATTCAATAGGATCCCTGCAGAAAGAGTGGAGGCTGGTGATATATGTGCAGTATGTGGAATTTCTGATATTCAGATTGGGGAGACAGTCGCTGATAAAGTGTCTGGGAAGCCACTACCTTCCATTAGGGTGGAAGAACCAACAGTGAAAATGTCTTTCTCCATAAACACTTCACCTTTTGTCGGTCGTGAGGGAAAGTATGTTACTAGTAGGAATTTAAGGGACAGGCTTTATCGTGAACTTGAGCGAAATCTGGCTATGAAAGTTGAAGATGGTGAAACAGCTGATACATTCATTGTCAGTGGGCGTGGAACTTTGCATATCACCATACTCATTGAAAATATGCGAAGAGAAGGATATGAATTCATGGTTGGGCCTCCCAAAGTTATCAACAAGAAAGTGAATGAACAATTGTTGGAACCGTATGAGATTGCAACTGTGGAGGTACCAGAAGAGCACATGGGAGCTGTTGTTGAACTTCTTGGCAAGAGACGAGGGCAAATGTTTGATATGCAAGGAGTTGGATCGGAGGGAACTACACTACTCAAATATAAGATCCCAACCCGTGGCCTTCTTGGACTNCGGAATGCAATTTTAACTGCTTCCAGAGGGACAGCTATTCTCAACACTATCTTTGACAGCTATGGGCCGTGGGCTGGTGACATCGGTACTCGGGATCTAGGCTCACTGGTTGCTTTTGAGGATGGAACAAGTACTTCTTATGCAATCGCTAGTTCACAGGAGAGGGGACAGATGTTTATTGGTCCGGGAATGGGAGTTTATAAAGGTCAAATAGTTGGCATCCATCAGCGACCTGGGGATTTGGCCTTGAATGTTTGNAAGAAAAAAGCTGCAACAAACATACGTTCCAACAAGGAACAAACAGTGATTCTTGATACACCATTGGATTATAGTCTGGATGACTGCATTGAATACATCCAAGAAGATGAACTAGTAGAGGTCACCCCCCAAAGTATCCGAATGTGCAAGAATCCAAAACTTGCAAAGAAAGGAAGGTAGACTTCCACTGGGAAGCAGTGAATTGCAGATGTTTTTTGAGGCAACACTGCTGAAACTGCATAACTCATTAAAGCTATTACTGCTAAAGTGATGAAGAGGCAAATCACTACCGTTTGATACAATGTCGCGTATATTCTTCCTCTGAAACTGCAGANTAATATAGGAGCTGGCTAGAAGCCGTATTCGCCATAGCTATTGTTCACAGTTGATTTAGAGGGATAAAGTTACATTAAATTTTGATTACATGTTTTCTTAAGTCTATATATATTGGCAGCAAGGAACATCATCAAAATAATGAATTGTTCATGATGAGGATTGATTGGTGAATAGAAAAGCTATACAAATGCCATGGGTTAAATTTCCCTGGGAGATTTCTAAATCAATCTCTGATGTTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00110	156677	163335	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0003924 GTPase activity

GO:0005525 GTP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000110s00011771.1	PF00009.22	GTP_EFTU	82	272	4.10E-51
Glyur000110s00011771.1	PF03144.20	GTP_EFTU_D2	296	365	5.00E-10
Glyur000110s00011771.1	PF00679.19	EFG_C	472	558	1.50E-19

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	13.008
SRR1783600	control	12.709
SRR1783602	moderate drought stress	12.150
SRR1811619	moderate drought stress	12.233

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	5.603
DRR006520	Root Summer glycyrrhizin high producing strain	5.761
DRR006521	Root Winter glycyrrhizin high producing strain	8.431
DRR006522	Root Winter glycyrrhizin high producing strain	8.065
DRR006523	Root Summer glycyrrhizin low producing strain	6.068
DRR006524	Root Summer glycyrrhizin low producing strain	5.415
DRR006525	Leaf Summer glycyrrhizin high producing strain	147.202
DRR006526	Leaf Summer glycyrrhizin high producing strain	147.444

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	25.409
SRR2868004	Drought Stress (root)	28.568
SRR2967015	Control (root)	22.253

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	174.413
SRR9715740	Leaf	253.434
SRR9715741	Leaf	160.440
SRR9715739	Root	2.449
SRR9715742	Root	15.863
SRR9715743	Root	12.635

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	13.085
SRR8749028	MeJA induced 9h	11.486
SRR8749029	MeJA induced 9h	7.692
SRR8749030	Uninduced	5.539
SRR8749031	Uninduced	3.461
SRR8749032	Uninduced	2.898

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	27.698
SRR8400027	Control - Root	22.956