Gene detail

Gene detail information of Glyur000110s00011765

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G57540.1	4.00E-39	Remorin family protein
NR	XP_004513774.1	2.49E-122	PREDICTED: ras guanine nucleotide exchange factor P-like [Cicer arietinum]
Swissprot	tr\|P93788\|REMO_SOLTU	6.00E-15	Remorin
trEMBL	tr\|A0A072VJH5\|A0A072VJH5_MEDTR	2.00E-118	Carboxy-terminal region remorin {ECO:0000313\|EMBL:KEH41588.1}

Sequence

Transcript Sequence

>Glyur000110s00011765.1
GCTCTGCATAAAACCAATCCAAAGAGACTTTTTCTCTCTTGTATACTACTTTACCTTCACTTTCTCTGTTCCACTACTTGACACCAAAACCCAACACACACAAACACACACAAACCCACAACAACAACCTTGTGCCATGTTGAACTTGAATGATCAAAGAGCTTCAACAAGCCATGTCCCAGGAGAGGTTTATGATGGTGGTGTTGAAGAAGAAGAAGAACAACAAATCAGAGAAATCCATGCCTTAACCCCTCCTCCACAACCAACCAACAACAACAACAGGGGCCACAGAAGAGATAATCAATTACCCTGGGGAACAACACAACACAGCCACCAATCCTCCCTTGTTTCCATAGCCAACACAGAAGTTGCTTCCAGTGAGAACTTCACAAGCATGAGTAGGGAATTCAGTGCTCTTGTTCTAGCTGGTTCAAGTGTTGACCATAACAGCACAACAAGCCCCATGATGATGAGTGGCAATAGTTATAGCAACGAAAGAGAAACCAACAACAACAACAACATTAACATTAACAACAACTTGAGGAGGATTAGAGAAGATGAGTTGATGGAAGAGACGAACCCTTTGGCGATTGTGCCAGATAACAACCCTCTGGAATTACCAGTTTCTCCAACAAGGCGTGGTGGTGGTGGTGGTGGTGGTGTTGGTGGGTCTTCATCTTCAGCTTCCGCTTCTGCAGGAACTATTGGTGGCCAGAGTGAAGTGACAGTGCAGAGGGTGAGGAAGGAAGAGGTTGAGGCCAAGATAGCAGCGTGGCAGAACGCTAAGGTTTCTAAGATTAATAACAGGTTCAAGAGGGAAGATGCTGTCATCAACGGGTGGGAGACTGAGCAGGTTCAGAAAGCAAATTCATGGATGAAGAAAGTTGAGAGGAAGCTGGAGGAGAAAAGAGCAAAAGCACTTGAGAAAATGCAGAATGAGGTAGCAAAGGCTCATAGGAAAGCAGAAGAGAGGAGGGCATCAGCAGAGGCTAAAAGGGGAACCAAAGTAGCCAGGGTTCTGGAGATTGCCAACCTTATGAGAGCAGTTGGAAGAGCTCCTTCAAAAAGATCCTTCTTTAAAGCTTAGTATGATATAATTATATTATATTTTCAAATCCCATTTGAACCACATTTGTAGATCCAAAAAAAGAAAGAAAAAAAAAGGAGCAAAAGAGAGAGAGAGAGAGAGAGAGAAGATTATGGGCATAATAATTGACATAATCTGATGAGAGAGCCCCTTTTCCTTTCAAATTTAACTCAAAGGGTTCAAGAGGGCTTGCAGTGAGTGAGTGAGTATAAAGAAAAAGAAATATGGAGGTGTATATATTATATTATGCTATATTATATAGAAACCAATTGGAGTGTTTTTGAGTGATCTATTACAGTGTGTTAGAATTTGGAGACATGATCATTTGGTTGGTTGTGCTGGTTAATATTTTCTTTTTTGGGTTNT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00110	118312	120915	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000110s00011765.1	PF03763.8	Remorin_C	202	311	2.00E-34

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	154.133
SRR1783600	control	153.176
SRR1783602	moderate drought stress	129.394
SRR1811619	moderate drought stress	127.432

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	159.632
DRR006520	Root Summer glycyrrhizin high producing strain	151.680
DRR006521	Root Winter glycyrrhizin high producing strain	64.407
DRR006522	Root Winter glycyrrhizin high producing strain	61.717
DRR006523	Root Summer glycyrrhizin low producing strain	164.411
DRR006524	Root Summer glycyrrhizin low producing strain	162.431
DRR006525	Leaf Summer glycyrrhizin high producing strain	4.651
DRR006526	Leaf Summer glycyrrhizin high producing strain	4.539

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	67.556
SRR2868004	Drought Stress (root)	48.895
SRR2967015	Control (root)	71.718

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.863
SRR9715740	Leaf	2.053
SRR9715741	Leaf	2.001
SRR9715739	Root	3.412
SRR9715742	Root	15.271
SRR9715743	Root	12.793

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.291
SRR8749028	MeJA induced 9h	1.435
SRR8749029	MeJA induced 9h	0.537
SRR8749030	Uninduced	0.740
SRR8749031	Uninduced	0.199
SRR8749032	Uninduced	0.275

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	85.722
SRR8400027	Control - Root	73.851