Gene detail

Gene detail information of Glyur000110s00011762

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G59960.1	2.00E-91	NAD(P)-linked oxidoreductase superfamily protein
NR	KEH16024.1	0	aldo/keto reductase family oxidoreductase [Medicago truncatula]
COG	YP_007202435.1	1.00E-59	aldo/keto reductase, diketogulonate reductase [Singulisphaera acidiphila DSM 18658]
Swissprot	tr\|P26690\|6DCS_SOYBN	1.00E-140	NAD(P)H-dependent 6'-deoxychalcone synthase
trEMBL	tr\|A0A072TEP5\|A0A072TEP5_MEDTR	0	Aldo/keto reductase family oxidoreductase {ECO:0000313\|EMBL:KEH16024.1}

Sequence

Transcript Sequence

>Glyur000110s00011762.1
ATTAATATCTTTCCATGTAGCAGTGGCAGAGTATAGTAGTTTTCCTTACTTCTATAAAGAGAGATGCAAAATGGCCATTATTCTCCACAGCATAAAATTCCAACCTTTTAGTAAAGCAAAGCAAAAAATAGGGGTGATACCATCATGTCTTCCACCAAAATCCCTCATGTTGTGCTGAAATCTTCCTCCAACCAATGCAAGATGCCAGTGATAGCATTTGGAACTGCATCTGACACTAACAAAAGCAGTGGAGAAACCACCAAAGTGGCAGTAATTGAAGCCATCAAACTGGGTTACAGACACTTTGACACTGCATCATGCTANGGATCTGAGGAGGCTTTGGGAGAAGGCATAGCAGAAGCTCTTCAACTTGGTCTCATAGGGTCAAGGGATGAGCTCTTTGTCACCTCCAAGCTCTGGTTGACTGACAATTTCCCTCATCTTGTTCTTCCTGCTCTCCAGAAATCACTTCAGACCCTGAAGTTAGAATATTTGGACCTATATTTGGTCCACTGGCCCATCAGTGTGAAGCCCGGAGATTGGGAATTGCCATACGCTGAGGAGTTAATAACCGCATTCGACTTAAAAGGGGTGTGGACAGCAATGGAAGAATGCCAGAAACTGGGCCTCACAAAATCTATAGGAGTCAGCAACTTCACTTGCAAGAAACTTGAAAATCTTCNCTCATTAGCTACCATTCCCCCTTCTGTCAATCAAGTGGAGATGAATCCTGCTTGGCATCAGAAGAAGCTGAAAGAATACTGTGAGGCAAAGGGTATAATCATAACTGCATTCTCTCCTTTAGGAGCCAAAGGGGCCAGTTGGGGTACCAATGAAGTTATGGAGAGTGAAATACTCAAGGAAATTGCAGAGGCCCATGGAAAATCTGTTGCTCAGGTATGTCTTAGATGGTTGTATGAGCAAGGCGTGACTATGGCAGTGAAGAGCTACAACAAAGAGAGATTGAAGCAGAACTTGGAGATATTTGATTGGTCACTTACAAGAGATGACCACGAAAAGATTAATCAGAAAAAGCAGATTCGTGTCAACAACGGGCCAGTTGTGTTCGTTCCTGACCTTTGGGATGGGGAAACTTAATTAAGCTTAATATTGGGTTCAATCTACTACTATATTTCTTGCGGTGTGTCAGTNTGAATGTCACTTGTATTCAGTTTTTGTTCTATTGGAGTGGGACCCAAAAATAAACAAAGTCTTTTAAAGGCCTTGAAAAGTGGTGCCATTTACCCATTTTACTGCTTTTTTTTTCTTCTGTTTTTACTTTTTTGCGTGATTTGTTTGTATTAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00110	102160	105869	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function
GO:0016491 oxidoreductase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000110s00011762.1	PF00248.16	Aldo_ket_red	23	296	6.90E-52

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	400.904
SRR1783600	control	409.592
SRR1783602	moderate drought stress	240.091
SRR1811619	moderate drought stress	242.142

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	106.786
DRR006520	Root Summer glycyrrhizin high producing strain	105.454
DRR006521	Root Winter glycyrrhizin high producing strain	1.022
DRR006522	Root Winter glycyrrhizin high producing strain	0.994
DRR006523	Root Summer glycyrrhizin low producing strain	50.327
DRR006524	Root Summer glycyrrhizin low producing strain	49.658
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.577
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.835

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	22.481
SRR2868004	Drought Stress (root)	39.212
SRR2967015	Control (root)	72.209

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.601
SRR9715740	Leaf	2.481
SRR9715741	Leaf	2.681
SRR9715739	Root	248.434
SRR9715742	Root	220.488
SRR9715743	Root	226.841

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.054
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	178.071
SRR8400027	Control - Root	498.614