Gene detail information of Glyur000110s00011752 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G14470.1 | 5.00E-84 | NB-ARC domain-containing disease resistance protein |
| NR | XP_003624016.1 | 0 | Disease resistance protein RGA2 [Medicago truncatula] |
| COG | YP_007097940.1 | 3.00E-13 | putative ATPase [Chamaesiphon minutus PCC 6605] |
| Swissprot | tr|Q7XA42|RGA1_SOLBU | 6.00E-117 | Putative disease resistance protein RGA1 |
| trEMBL | tr|A2Q4E5|A2Q4E5_MEDTR | 0 | Disease resistance protein (CC-NBS-LRR class) family protein {ECO:0000313|EMBL:AES80234.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00110 | 36296 | 40006 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000110s00011752.1 | PF00931.17 | NB-ARC | 171 | 462 | 3.00E-65 |
| Glyur000110s00011752.1 | PF13855.1 | LRR_8 | 575 | 631 | 1.50E-06 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 5.909 |
| SRR1783600 | control | 5.987 |
| SRR1783602 | moderate drought stress | 1.256 |
| SRR1811619 | moderate drought stress | 1.226 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 3.776 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 3.692 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.484 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.408 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.325 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.356 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.661 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.635 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 2.967 |
| SRR2868004 | Drought Stress (root) | 2.924 |
| SRR2967015 | Control (root) | 4.417 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 2.900 |
| SRR9715740 | Leaf | 1.778 |
| SRR9715741 | Leaf | 4.168 |
| SRR9715739 | Root | 0.869 |
| SRR9715742 | Root | 7.467 |
| SRR9715743 | Root | 5.066 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 5.586 |
| SRR8749028 | MeJA induced 9h | 4.594 |
| SRR8749029 | MeJA induced 9h | 2.232 |
| SRR8749030 | Uninduced | 1.773 |
| SRR8749031 | Uninduced | 0.837 |
| SRR8749032 | Uninduced | 0.908 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 13.353 |
| SRR8400027 | Control - Root | 17.955 |