Gene detail

Gene detail information of Glyur000109s00010658

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G02090.1	3.00E-42	Proteasome component (PCI) domain protein
NR	XP_004492937.1	1.64E-79	PREDICTED: COP9 signalosome complex subunit 7-like isoform X1 [Cicer arietinum]
Swissprot	tr\|Q94JU3\|CSN7_ARATH	8.00E-63	COP9 signalosome complex subunit 7
trEMBL	tr\|A0A072U221\|A0A072U221_MEDTR	6.00E-76	COP9 signalosome complex subunit-like protein {ECO:0000313\|EMBL:KEH23446.1}

Sequence

Transcript Sequence

>Glyur000109s00010658.1
ATGTCTGCTCTTGAAACAACTGAGAATTCTGCCTACCTTGATATGCTTCGATTGTTTGCACATGGAACATGGAGTGATTTCAAGATGTTGGGGGTACCTATTAATCTGAGATTCATCAGCAAGTGGCCTATTCCAGAGTTAGACGTGACAAATGTTCGTGAACTTGAAGATTTTCTAATTAACGAGTGCATGTATGCGGGAATAGTCAGAGGAAAGCTGGATCAGTTGCAACGATGCTTTGAGGTCCAATTTGCAGCAGGTAGAGACTTAAGGCCTGGTCAACTGGGGAAGAAGATAAAATGGGCTGATGCAATGAGTGAAAATGACAAGAAACACAGGAAGGATGTGGAAGAGAGGGTAGAAGAAGTAAAGAAGTCCCTTTTCAAGGCCGACATCGACTTCAGAGGCCATGAGGAGATCTGCTCTGAATCTGGTGGAGTGATGGATTATGAAGAAGATCGAAGCCGACCAAAGAGGTAATTTGAGAAAACAAGTAAAGTATTTGATCAATTGTCTTAATAGTATTGATTTTCTACATTGAAACTTGAAGCTAGCCATGAAATCACCTAAATGCAATACTTAAAATGTTTTTAGCTCCTGGCTGGTCTAGTGGATGAATGAAGCTGTCACTTTTGTATTTGTGACTAAATGTCCACATACTATATTTATTAGAAGTGAGTCACCCGCCCCCTTTTTCCTCTCTAATGACCTTTTATGTTAAACCTGTATGGCATAATCATAGTCCATCAATGGAACCGAGATTAAATATGGCATTATAAAGGAGGCTGGATATAAATGTGTTCTGTAGCATCTATTTCAAGCTAGAATATGATTAAGCTGTGTATCTAGTTTAGATAATCAATTTTTCCTCATATTCTATCATAAGATTCTTGGGTTGGAAAATTTGCAGGAGGCGGCATCCAATATCTTGAAGATTGTAGTAGATAAAGGAGCTCATTGGATGGGTGTTCTAGTTGCTTGCCTGACTTTTATTCATGGCATGCGTCAACTGAGAATATCAGCTTTTGGAGACAAGTTTATCTCATCGATATTGCACTTGTCTGTCACACCACAAAGCGAGATAGTAACAAGGAACAAAAGGGCGGGGGACAAACCTTTTATTTCTTCAAGGTTGTATTTTGGAAATTGATAGTATTTCTTGAAACCATTGTTGTTAATCTTATACTGAGTTGGCAAGAACAAGTTGAGATGGTGGGTGCGGCTGTTCTTTGTTTTTGTTTTTGGTTGCTAAATGCTACATTGTTTTCCTTTGTATTATGCTTCATATATATTGCCTCAATTGCATTGCTATACTTTGTGG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00109	272023	278089	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--	--

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	21.564
SRR1783600	control	21.866
SRR1783602	moderate drought stress	25.129
SRR1811619	moderate drought stress	25.119

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	48.780
DRR006520	Root Summer glycyrrhizin high producing strain	47.135
DRR006521	Root Winter glycyrrhizin high producing strain	87.031
DRR006522	Root Winter glycyrrhizin high producing strain	84.822
DRR006523	Root Summer glycyrrhizin low producing strain	46.777
DRR006524	Root Summer glycyrrhizin low producing strain	47.248
DRR006525	Leaf Summer glycyrrhizin high producing strain	22.787
DRR006526	Leaf Summer glycyrrhizin high producing strain	22.658

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	49.432
SRR2868004	Drought Stress (root)	46.456
SRR2967015	Control (root)	51.532

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	28.559
SRR9715740	Leaf	32.044
SRR9715741	Leaf	33.885
SRR9715739	Root	8.517
SRR9715742	Root	21.067
SRR9715743	Root	18.965

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	45.702
SRR8749028	MeJA induced 9h	25.140
SRR8749029	MeJA induced 9h	34.437
SRR8749030	Uninduced	24.654
SRR8749031	Uninduced	30.565
SRR8749032	Uninduced	23.771

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	36.943
SRR8400027	Control - Root	33.716