Gene detail

Gene detail information of Glyur000109s00010647.1

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT2G44900.1	ARABIDILLO-1
NR	KHN20477.1	Protein ARABIDILLO 1 [Glycine soja]
Swissprot	tr\|O22161\|ADLO1_ARATH	Protein ARABIDILLO 1
trEMBL	tr\|K7MUN9\|K7MUN9_SOYBN	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA18G48841.2}

Sequence

Transcript Sequence

>Glyur000109s00010647.1
CTTGGTCTTGACCCTCCATGATATCTCTCATATAAATGTTGCTGATTTTATGAGCTGTAGTTTCACAGCCCTGTTGTTCTCCTTCCCCATTCCATCCTTCCCTTGTGGTTTCGCCCCNAATGCTGTAATTCTCTGTCTCTGTTGCTACATTTCCCTTCTCTCCATCCTCCACCAATCTAATCACCATTTCCTTCCCCTTTCACTTGTTTGCGCCACAAACACATAACCTTGACCCTTTTCAGGGTCTGGGTTTCTCTATGAGAATTCTCTTTCTCTCCCCATCACCCCATTCAACCAGCTTCATTTCTCACTCCCATTTCTTCCTCGGGTTCCATTGCAAATTCCCTTTAATGCATCTGATTTGTGTCTCCAACCNTCAACGAAGACCACAATCCCTGAGCTCACAGGTGTAGCTGTTGGTTTTGCTGTGATTTTGTTGAGACATGAGTCGTAGAGTGAGGAGGAAGGTGGCTAANAAAGGTAAAGGGAATGTGGTGTTGTCCAGCTTTCCTGAAATTCAAGGAGAGGTTTTGGATTCAGAACGCCAAGGAGATGTTGATTGGAGGAGCTTACCTGATGATACAGTAATTCAGCTGTTGTCATGTCTGAGTTATCGAGACCGAGCTAGCTTATCATCAACTTGTAGGACATGGAGGTTTCTCGGTAGCTCCCCATGTTTGTGGACTTCTCTGGATCTTCGTTCCCACAAGTTTGATGTTAAAATGGCATCTTCACTTGCTCCCAGATGTGTGAATCTTCAGAAGCTTAGGTTTCGAGGGGCAGAGTCCGCTGATGCAATACTTCATCTTCGAGCTAGGAACTTGCGNGAGATAAGTGCAGACTATTGCAGGAAGATTACTGATGCAACTCTTGCTGTGATTGCGGCGCGGCATGAGTTACTTGAGAGTCTTCAGCTTGGACCAGATTTCTGTGAGAGAATCACTAGTGATTCTATAAAAGCAATAGCTCATTGCTGTCCTAGATTGAATAAACTCAGACTGTCAGGNGTTAGGGATGTAACTGCTGATGCTATTAATGCCTTGGCTACGTATTGTCCAAAGTTGACTGATATTGGGTTCATTGACTGTCTGAGTGTTGACGAGCTTGCATTGGGAAATGTTCTATCAGTTCGTTTCCTTTCTGTTGCTGGGACACCGAATATGAAGTGGGGCGTGGCTTCCCATCTTTGGCATAAGCTTCCCAACCTGATTGGATTAGATGTTTCAAGAACTGATATCGGTCCATCTGCCNTTTCAAGATTGTTATCATTGTCACGGAATTTGAGGGTTTTGATTGCTTTGAATTGTCCTATCCTNGAAGAAGACACCAGCTTCTCTGCTAGTAAATATAAAAACAAGTTATTAGTTTCCCTTTGTACTGATATTTTTAAAGGACTATCTTCTTTATTTTTTGATGATACAACNAGAGGAAAGAATGTGTTTTTGGACTGGAGGATTTCAAAGAATAATGATAAGGACCTTAATGAAATTGTACCCTGGCTTGAATGGATGCTATCCCATATACTTTTGCGTTCTGCTGAGAGCCCTCAACAGGGTCTTGATAATTTCTGGATTGAACAAGGTGGATCTCTCTTGCTTAGTCTAATGCAGAGTTCTCAAGAGGATGTTCAGGAGAGGGCAGCCACAGGTCTTGCAACTTTTGTTGTAATTGANGATGAAAACGCTAGCATAGATTGTGGAAGGGCTGAAGCAGTTATGCGAGATGGTGGCATACGCCTCCTTCTTGGCCTAGCAAAATCTTGGAGGGAAGGGCTTCAGTCTGAGGCAGCTAAGGCTATTGCAAATTTGTCNGTCAATGCCAATGTGGCCAAAGCTGTTGCAGAAGAGGGCGGGATTCAGATTCTTGCTGGTTTGGCTAGGTCAACGAACAAGCTAGTTGCTGAAGAGGCTGCTGGTGGACTATGGAATCTCTCTGTCGGAGAAGAGCACAAGGGCGCCATTGCTGAAGCTGGTGGAATACAAGCCTTAGTGGATCTTATATTCAAGTGGTCCTCTACTGGAGACGGAGTTTTAGAACGTGCAGCTGGTGCATTGGCTAATTTGGCGGCTGATGACAAATGCAGTACAGAGGTTGCGCTGGCAGGAGGTGTACATGCTCTGGTGATGCTTGCTCGTAACTGCAAATANGAGGGAGTGCAAGAGCAGGCTGCTCGTGCATTGGCTAATTTAGCTGCTCATGGAGATAGTAACAGTAACAATGCTGCTGTTGGGCAAGAAGCAGGTGCTCTTGAGGCTCTTGTTCAACTTACACGCTCTCCCCATGAGGGCGTCAGGCAAGAAGCTGCTGGTGCACTTTGGAATTTGTCATTTGATGATAGAAATCGAGAGGCCATTGCNGGAGCCGGTGGAGTTCAGGCTTTGAGGGCTGCTGGTGCTCTATGGGGTTTGTCAGTTTCTGAAGCCAATAGCATTGCCATTGGACGAGAAGGTGGTGTTGCACCTCTGATTGCACTGGCACGGTCTGAAGCAGAGGATGTTCATGAAACTGCTGCAGGAGCACTATGGAATCTTGCTTTCAACCCTGGTAATGCTCTACGAATAGTGGAGGAAGGTGGAGTATCTGCACTTGTCGATCTCTGCTCTTCATCAGTGTCAAAAATGGCACGATTTATGGCTGCACTGGCATTGGCTTACATGTTTGATGGGAGAATGGATGAATTTGCTTTAGTAGGCACCATGTCAGAAAGTATTTCCAAGAGTGTGAGCTTGGATGGAGCTAGAAGGATGGCTCTGAAACACATTGAGGCTTTTGTTCTCATGTTTTCTAATCAGCAAACATTTGCGGCTGCTGCCGCATCATCAGCTCCTGCAGCACTAGCACAGGTTACNGAAGGTGCTCGTATTCAAGAAGCTGGACACCTGAGATGCAGTGGTGCTGAAATTGGAAGATTTGTTGCCATGCTGCGAAATCCATCATCAATACTCAAAGCTTGTGCAGCATTTGCTCTTCTCCAGTTCACAATCCCTGGTGGAAGACACGCGATGCACCATGCTAGCCTCATGCAGAACGCGGGGGCAGCAAGAGTTCTGCGCGGTGCAGCCGCAGCAGCAACTGCACCGCTCGAAGCAAAGATCTTCGCCAGGATCGTTCTTCGCAACCTCGAGTATCACCAGATAGAGCACACAGTGTAGATCAATCAATGAAANGCACACCACCTGTTGTTGTTTACGGTCTCTCTTTCTCAAACACCATTTTGGGCTTTGTGATATTTTCACATGTACACAACTCCCCCAACCTGCCATAAGAACACTGCTCGCTGATGTCTTGATGTCAGTGAAGCAAGTTATAAATTGACAGGTTGTGTCCTTGTAGTAGTCTTTTAGAACTGCTTAGTAAACAGTTCTTGTTTTTGAGATGTATTTCTACCCCCGTCTTGTATCAATCTTTTCAGGTCAAGGCTGCAGCAGATAGGCAAATTGATATAAATTTTATTGCCTTGGATGGTTTATATTTTCTTTGTATTATTCTTACATATATTCTGTAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00109	217004	226226	+

Gene family

Gene family	subfamily
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0005488 binding

GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000109s00010647.1	PF12937.2	F-box-like	40	86	1.60E-06
Glyur000109s00010647.1	PF00514.18	Arm	462	497	2.30E-05
Glyur000109s00010647.1	PF00514.18	Arm	501	542	6.00E-07
Glyur000109s00010647.1	PF00514.18	Arm	553	584	7.80E-05
Glyur000109s00010647.1	PF00514.18	Arm	589	628	2.50E-09
Glyur000109s00010647.1	PF00514.18	Arm	660	697	2.50E-07

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	22.131
SRR1783600	control	21.690
SRR1783602	moderate drought stress	27.927
SRR1811619	moderate drought stress	27.612

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	23.354
DRR006520	Root Summer glycyrrhizin high producing strain	23.102
DRR006521	Root Winter glycyrrhizin high producing strain	24.687
DRR006522	Root Winter glycyrrhizin high producing strain	23.724
DRR006523	Root Summer glycyrrhizin low producing strain	25.380
DRR006524	Root Summer glycyrrhizin low producing strain	25.309
DRR006525	Leaf Summer glycyrrhizin high producing strain	16.173
DRR006526	Leaf Summer glycyrrhizin high producing strain	16.394

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	26.555
SRR2868004	Drought Stress (root)	26.651
SRR2967015	Control (root)	32.137

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	15.914
SRR9715740	Leaf	19.208
SRR9715741	Leaf	15.643
SRR9715739	Root	30.166
SRR9715742	Root	27.637
SRR9715743	Root	26.665

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	19.862
SRR8749028	MeJA induced 9h	13.401
SRR8749029	MeJA induced 9h	11.372
SRR8749030	Uninduced	8.159
SRR8749031	Uninduced	6.059
SRR8749032	Uninduced	8.393

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	29.362
SRR8400027	Control - Root	29.830