Gene detail information of Glyur000109s00010640 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G40010.1 | 7.00E-164 | AAA-ATPase 1 |
| NR | XP_007139617.1 | 0 | hypothetical protein PHAVU_008G044800g [Phaseolus vulgaris] |
| COG | YP_591316.1 | 2.00E-25 | ATPase AAA [Candidatus Koribacter versatilis Ellin345] |
| Swissprot | tr|P46465|PRS6A_ORYSJ | 8.00E-14 | 26S protease regulatory subunit 6A homolog |
| trEMBL | tr|V7B574|V7B574_PHAVU | 0 | Uncharacterized protein {ECO:0000313|EMBL:ESW11611.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00109 | 184016 | 185530 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000109s00010640.1 | PF14363.1 | AAA_assoc | 18 | 115 | 3.00E-24 |
| Glyur000109s00010640.1 | PF00004.24 | AAA | 240 | 394 | 2.40E-14 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.786 |
| SRR1783600 | control | 0.792 |
| SRR1783602 | moderate drought stress | 0.291 |
| SRR1811619 | moderate drought stress | 0.300 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.143 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.142 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.363 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.350 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.245 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.245 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.960 |
| SRR2868004 | Drought Stress (root) | 3.453 |
| SRR2967015 | Control (root) | 1.568 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.417 |
| SRR9715740 | Leaf | 0.000 |
| SRR9715741 | Leaf | 0.141 |
| SRR9715739 | Root | 0.016 |
| SRR9715742 | Root | 0.251 |
| SRR9715743 | Root | 0.081 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 4.537 |
| SRR8400027 | Control - Root | 7.727 |