Gene detail information of Glyur000109s00010639 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G28630.1 | 2.00E-88 | Protein of unknown function (DUF569) |
| NR | KHN11577.1 | 5.94E-148 | hypothetical protein glysoja_006030 [Glycine soja] |
| trEMBL | tr|G7IK68|G7IK68_MEDTR | 3.00E-146 | Actin cross-linking protein {ECO:0000313|EMBL:AES63678.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00109 | 172778 | 176646 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000109s00010639.1 | PF04601.8 | DUF569 | 1 | 141 | 3.60E-70 |
| Glyur000109s00010639.2 | PF04601.8 | DUF569 | 1 | 141 | 3.60E-70 |
| Glyur000109s00010639.3 | PF04601.8 | DUF569 | 1 | 141 | 3.60E-70 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.020 |
| SRR1783600 | control | 1.697 |
| SRR1783602 | moderate drought stress | 1.338 |
| SRR1811619 | moderate drought stress | 1.407 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.168 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.385 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.131 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.085 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.553 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.526 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 16.098 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 15.755 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 6.566 |
| SRR2868004 | Drought Stress (root) | 6.165 |
| SRR2967015 | Control (root) | 5.795 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 33.414 |
| SRR9715740 | Leaf | 33.049 |
| SRR9715741 | Leaf | 32.340 |
| SRR9715739 | Root | 0.600 |
| SRR9715742 | Root | 0.073 |
| SRR9715743 | Root | 0.488 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.319 |
| SRR8749028 | MeJA induced 9h | 0.360 |
| SRR8749029 | MeJA induced 9h | 0.024 |
| SRR8749030 | Uninduced | 0.099 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.067 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 11.035 |
| SRR8400027 | Control - Root | 17.627 |