Gene detail

Gene detail information of Glyur000109s00010638

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G08850.1	1.00E-93	Leucine-rich repeat receptor-like protein kinase family protein
NR	KEH21564.1	0	LRR receptor-like kinase family protein [Medicago truncatula]
COG	YP_004775215.1	8.00E-24	RHS repeat-associated core domain-containing protein [Cyclobacterium marinum DSM 745]
Swissprot	tr\|Q8VZG8\|Y4885_ARATH	2.00E-113	Probable LRR receptor-like serine/threonine-protein kinase At4g08850 (Precursor)
trEMBL	tr\|A0A072TVM7\|A0A072TVM7_MEDTR	0	LRR receptor-like kinase family protein {ECO:0000313\|EMBL:KEH21564.1}

Sequence

Transcript Sequence

>Glyur000109s00010638.1
ATGAAGTCTTTTGTTTCTAATTTCTACCACTCGGAAATAATATGGAGGATTGCATTTCTTCTCATTTGGGGTGTTGTGATCATGGGGACTCATTCTGCAGCTGCACCATCACAGCTTCAACTGGAAGCCAATGCTATACTCAATAGTGGATGGTGGAACACGTCCTTTTCATCAGACTTCAATATCTCCAATCGATGTAACTGGACTCAATATATAGATTGCAACGAGCACGGAAGCATAATAGGAATCTACATAAACCTTTTCCTTTATCAACTTGGAGCGGAGACAAAGATTCAATTAGCAACACTCAACCTCTCTGCTTTCCACAATTTAGAAAGCCTTGTTGTCAGGAATATTGGACTACAAGGGACTATCCCGCCAGAAATTGGTACTCTCTCCAAACTCATTCATCTCGATTTGTCCTTGAATCATCTTGAAGGTAAAANACCTCCTTCCCTAGGAAATCTAACAAGATTAGAGCATTTAGACATCTCCAAGAACAACATTCAAGGTTCCNTTCCCCCTGAGTTGGGGTTCTTGCAAAGTCTCACTGCATTAGATCTATCTTTTAATAGAATCAATGGGACCTTGCCTATTTCCCTTACAAGTCTCACCCAGTTAGAACGGCTTGACATTTCCTACAATCATCTCATCGGTTCCCTCCCTTCTAATTTAGGTCAATTATCCAACTTGCAAGAGTTGTTGCTATGTAACAATTTCATCAATGAGACCTTGCCTACTTCACCTACAAACCTCATCCAGTTTCTCTGCACTATCCAACATGTTGACATTTCCTACAATCATTTGAAAGGCCCCATTCCATACTGCATTGATCCTCATGCCTTAATGGGGAACAAGGAGGTATGTTCCGACATTTCAAATATCCAAATTCGATTCCAATTCCAACCTTGCCCACCTCGTAGCAAGACAGGTGGCAAAGTAATGCACAATCTACTCATAGTTCTTCCTGTTCTCATTATTCTAATCCTAGCCTTCTACCTACTCGTGTGTCTGAAGTTGTTTCGTCACATTACAACTAAGAACAAGCATGCAAACACCACGGTGACTATTAAGAATGGGGATTTATTCTGTGTATGGAATTACGATGGAAAAATAGCGTACGATGACATCATCAAAGCAACACAAGACTTTTGCTTGAAGTACTGCATTGGAACAGGAGCGTATGGGAGTGTGTACAAGGCACAATTACCCAGCGGCAAGGTTGTTGCCTTGAAGAAACTCCACGGCTATGAAGCAGAGGTGCCAGCTTTTGATGAGAGTTTTAGAAATGAAGTTAGAGTATTAACAGAAATAAAGCATCGGCATATTGTGAAGCTTCACGGATTCTGCTTGCACAAAAGAATCATGTTTTTGATCTATGAGCACATGGAGAGAGGAAGCTTGTTCTCTGTCTTGTTTGATGATGCGGAAGCAATGGAATTNGAATGGATAAAGAGGGTTGAGATTGTTAAAGGAATTGCACTTGCTCTCTCATATCTTCATCATGATTGCACCCCTCCAATAGTGCATAGAGACATCGCTACCACCAATGTCTTGCTTAACTCTGAGTGGCAGCCCAGTGTTGCTGACTTTGGCACAGCCAGACTCCTCCAACATGATTCATCCAATCGAACAATAGTTGCTGGTACTATTGGATATATAGCTCCCGTGGGAAGGCATCCTAAGGAAATATTGTCATTACTCCAATCATCATCAACTCAAGGCATCAAACTATGTGAAGTTTTGGACCAACGCCTCCCATTGCCAGATAGGGCAGTTTTACCTGACATAGTTCGTGTTGCCATAATAACATTTGCATGCTTAAATCCCAATCTTTGTTCACGGCCAACAATGAAATGTGTGTCTCATTGTTTTCTTACTCAGCCAAGACCATTAAACATTCCTTTACGTGAAATTTCACTACTGCAGCTCATGAGTCAAGAACTAAAAGCATTGATGAGGTTCATGCACCCATTCTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00109	166893	170576	-

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.9.2

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0004713 protein tyrosine kinase activity

GO:0005515 protein binding

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000109s00010638.1	PF13855.1	LRR_8	134	193	3.60E-08
Glyur000109s00010638.1	PF00560.28	LRR_1	206	228	0.098
Glyur000109s00010638.1	PF00069.20	Pkinase	386	556	8.90E-33

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.018
SRR1783600	control	0.019
SRR1783602	moderate drought stress	0.038
SRR1811619	moderate drought stress	0.039

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.113
DRR006520	Root Summer glycyrrhizin high producing strain	0.109
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.167
DRR006524	Root Summer glycyrrhizin low producing strain	0.387
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.346
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.365

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.019
SRR2868004	Drought Stress (root)	0.112
SRR2967015	Control (root)	0.118

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	17.165
SRR9715740	Leaf	17.716
SRR9715741	Leaf	22.078
SRR9715739	Root	0.220
SRR9715742	Root	0.674
SRR9715743	Root	0.422

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.702
SRR8749028	MeJA induced 9h	1.318
SRR8749029	MeJA induced 9h	0.517
SRR8749030	Uninduced	0.751
SRR8749031	Uninduced	0.039
SRR8749032	Uninduced	0.247

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.158
SRR8400027	Control - Root	0.585