Gene detail

Gene detail information of Glyur000109s00010631

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G69840.7	8.00E-132	SPFH/Band 7/PHB domain-containing membrane-associated protein family
NR	KEH24971.1	0	SPFH/band 7/PHB domain membrane-associated family protein [Medicago truncatula]
COG	YP_007201322.1	3.00E-95	membrane protease subunit, stomatin/prohibitin [Singulisphaera acidiphila DSM 18658]
Swissprot	tr\|Q9FM19\|HIR1_ARATH	3.00E-175	Hypersensitive-induced response protein 1
trEMBL	tr\|A0A072U6I0\|A0A072U6I0_MEDTR	0	SPFH/band 7/PHB domain membrane-associated family protein {ECO:0000313\|EMBL:KEH24971.1}

Sequence

Transcript Sequence

>Glyur000109s00010631.1
CCCAAAACCAGATTCTTGACATAATCTACCACAACCTTTCAATTTAATGCAATGTTTGGGTAGCCATTCATTTTCAGTTTGCACGAATTCTAAAGTNAAGTTTGTGAGAAGGATTGTTGCTGTAGCTCCAAACTGAATTTCAGTGGCCAACAAAAAATCAAACCGCCACTAATTACTTCAAACTATTTTCGCCCACAGTTCCAAATCCTCTCTCTATATAAACCACACGCAAATTATTACGTATATAGTAATATATTCAAACTTTCTGGGTATTCATTCCATCACTTGAAAGGTGAATATATCTCTTCAGCAACTCTTCTCAATTATACTTGTTGTGTTGGCAAAAAACTACTAGCACCTCTACCTCGAATAATGGGTCAAGCGTTGGGTTGCATTCAAGTGGATCAGTCAAATGTGGCTATNAGGGAACAATTTGGGAAATTTGATGATGTTCTAGAACCTGGGTGTCACTGCTTGCCTTGGTGTCTTGGATTCAACATAGCTGGTAGTTTATCACTACGTGTGCAGCAGCTTGATGTCAAATGTGAAACAAAAACCAAGTCTTTAACCAGATATCTCATATGCATGACTCTGGAGTTAACCCTCAACATGGATGATAATGTCTTTGTGAATGTGGTTGCATCTGTGCAATACCGTGCTATGGCAGATAAAGCATCTGATGCCTTCTATAAGCTCACCAACACAAGGGAACAAATTCAATCATATGTTTTTGACGTTATCAGGGCCAGTGTGCCAAAGTTGGAGTTGGANGCTGTCTTTGAACAGAAGAATGAGATAGCAAAGGCTGTTGAAGATGAGCTTGAAAAGGCCATGTCTACTTATGGGTATGAGATAGTCCAGACTCTCATTATTGATATAGAGCCAGACATTAATGTTAAGAGAGCTATGAACGAGATCAATGCAGCTGCTAGAATGAGGTTGGCTGCTAATGANAAGGCTGAAGCAGAGAAGATACTGCAGATCAAGAGAGCAGAGGGAGAGGCAGAGTCAAAGTATCTGTCAGGACTCGGAATTGCTCGGCAGCGTCAGGCCATCGTGGACGGTCTGAGGGACAGTGTGCTTGCATTCTCTGAGAATGTACCTGGGACAACTGCTAAAGATATCATGGACATGGTGTTGGTGACTCAGTACTTTGACACAATGAAAGAGATTGGGGCATCTTCTAAGTCCTCATCTGTTTTCATACCACATGGCCCAGGTGCTGTCAAGGACATTGCTATGCAGATCCGGGATGGTCTCCTTCAGGCTAATGCTGCCAATNTCTAATAAATTAAGCCTTTCTGGAACTGTAATAATACATATTGTGCTTGTTCNTTTTTTTTGGGGGATTATGCTTGGTTTTGTTTGTGTAGTTTTGGATCAGGACAGTGGTGCTTTAATCTTACAAAGTTGATTCTTTTCGCTTGGGATACCGTACGGATGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00109	107795	110739	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

cellular_component
GO:0016020 membrane

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000109s00010631.1	PF01145.20	Band_7	9	200	1.70E-26

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.281
SRR1783600	control	3.243
SRR1783602	moderate drought stress	4.156
SRR1811619	moderate drought stress	4.152

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	10.923
DRR006520	Root Summer glycyrrhizin high producing strain	10.678
DRR006521	Root Winter glycyrrhizin high producing strain	131.725
DRR006522	Root Winter glycyrrhizin high producing strain	127.562
DRR006523	Root Summer glycyrrhizin low producing strain	46.458
DRR006524	Root Summer glycyrrhizin low producing strain	46.299
DRR006525	Leaf Summer glycyrrhizin high producing strain	28.859
DRR006526	Leaf Summer glycyrrhizin high producing strain	28.318

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	113.349
SRR2868004	Drought Stress (root)	99.523
SRR2967015	Control (root)	76.057

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	90.925
SRR9715740	Leaf	126.125
SRR9715741	Leaf	132.917
SRR9715739	Root	13.559
SRR9715742	Root	10.801
SRR9715743	Root	12.241

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	152.802
SRR8749028	MeJA induced 9h	285.425
SRR8749029	MeJA induced 9h	370.990
SRR8749030	Uninduced	165.544
SRR8749031	Uninduced	273.790
SRR8749032	Uninduced	230.909

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	30.422
SRR8400027	Control - Root	27.547