Gene detail

Gene detail information of Glyur000109s00010626

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G08850.1	2.00E-122	Leucine-rich repeat receptor-like protein kinase family protein
NR	XP_003621168.1	0	Receptor protein kinase-like protein [Medicago truncatula]
COG	YP_004775215.1	2.00E-52	RHS repeat-associated core domain-containing protein [Cyclobacterium marinum DSM 745]
Swissprot	tr\|Q8VZG8\|Y4885_ARATH	2.00E-160	Probable LRR receptor-like serine/threonine-protein kinase At4g08850 (Precursor)
trEMBL	tr\|G7KZX4\|G7KZX4_MEDTR	0	LRR receptor-like kinase family protein {ECO:0000313\|EMBL:AES77386.1}

Sequence

Transcript Sequence

>Glyur000109s00010626.1
ATGATCATGGGTACTCATTCTGCGACTGCACCATCACCATCGCAGCTTCAACTGGAAGCCAATGCTATCCTCTCTAGTGGGTGGTGGAACACCTCCGACCCACACTTCAATATCTACAATCGCTGTAACTGGTCTCACATAGATTGCAATGAGGCCGGAAGCATAAAAGGAATCCACATAGNGCCTATTAATTATCCTATTGATTATCTTTATGGAGCCTATCAATTAGCAACACTCAACCTCTCTNTTTTCCATAATTTAGACNGCCTTGTTGTCACGAATATTGGACTACGAGGGACTATCCCACCACAAATNGNTACTCTCTCCAAACTCACTCATCTCGATTTGTCCTACAATGCTCTTAAAGGTAAAATGCCTCCTTCACTAGGAAATCTGAGCCTATTAGAGCACCTAGACATCNNCTTCAACAACATTCAAGGCTCNATTCCTCCTGAGTTGGGGTTCCTGAAATGTCTCACTGCATTAAATCTATCTAATAACATAATCGATGGTAGCTTACCTACTTCCTTTACAACTCTCACCCGATTAGAACGGCTTGACATTTCCAACAATCTCCNCAGTGGTTCCCTCCCTTCTAATTTGGGTCATCTATCCAACTTGCGAGAGTTGTATCTAGGTAGCAACTCCATCAATGGGACCTTGCCTACTTCACTTGCAAATCTCTCTCAATTACAAGTGCTTGACATTTCCCACAATTTACTCAGTGGTTCCCTCCCTTCTAATTTGGGTCATCTATCCAACTTGCGAGAGTTGTATCTACGTAGCAACTCCATCAATGGGACCTCGCCTACTTCACTTGCAAATTTCACCAAGTTAGAGTTGCTTGACATTCCCAACAATCTTCTCAGTGGTTCCCTTCCTTCTAGCTTGGGTCATTTATCCAACTTGCAACGGTTGTGTCTAGGCAACAACTCCATTGGTGGGACCATGCCTACTTCACTTACAAATCTCTTTCAATTACAAGTGCTTGACATTTCCAACAATCTTCTCATTGGCTCCCTCCCTTCTAATTTCTCTACATTAANCAGCTTGCAAGTGTTGCGGCTAAATAAAAACTTCATCAATGGGAACATGGTACCCTTGTCAGTTGGAAGCTATGCACANCTCACCTTTATTGACCTCAGCCACAATCTCATTAGTGGTGAAATACCATCTCAGCTTGGATATTCTCTACAAAATCTNGATTTAAGCTACAATAATCTCATTGGAACGGTTCCCCAGTATCTCTGTACTGTCTCATATGTGAACATTTCCTACAATCATTTGAAGGGTCCCATTCCACACTGTATCAATCCTCATGCCCTAATAGGGAACAAGGAGGTATGTTCTGATGTTTCANGTAACCAACTCCTATTCCAATTCCAACATTGTACACCTCGCAGCAACATCTCAAGTAACAAAGTAAGCAAGACATGTTTCAAAGTACTACACAATCTAGTCATAGTTCTTCCTATCCTCATTATTCTAATCCTAGCCGTCTCACTATTCATGTGTTTGAAGCTTCATAACACTGGAAGTAAGAGCAAAAATGCAAACACAATGACAACTAAGAATGGGGATTTGTTCTGTGTTTGGAATTACNATGGAAAAATAGCTTATGATGACATCATCAATGCAACAAATGACTTTGACTTGAAGTACTGCATTGGAACAGGAGCNTATGGGAGTGTTTACAAGGCACAATTACCTAGCGGCAAGGTTGTTGCCTTGAAGAAACTCCACGGCTATGAAGCAGAGGTGCCAGCTTTTGATGAGAGTTTTAGAAATGAAGCGAAAGTGTTGTCAGAAATAAAGCATCGGCATATTGTGAAGCTTCACGGGTTCTGCTTGCACAGAAGGATCATGTTTTTGATCTATCAGTACATGGAGAATGGGAGCTTGTTCTCTGTCTTGTTTGATGATAGGAAAGNGATGGAATTGAAATGGAGAAAGAGGGTTGAGATTGTTAAAGGAGTTGCACTTGCTCTCTCATATCTTCATCATGACTGNACCCCTCCAATAGTGCATAGAGATATAGCTACCACCAACATCTTGCTTAACTCTGAGTGGCAGCCCAGTGTTGCTGACTTTGGAATAGCCAGACTCCTCCAACATGATTCATCCAATCGAACAATAGTTGCTGGTACTATTGGATATATCGCTCCGGAGCTTGCCTATACTATGGTTGTGANTGAAAAGTGTGATGTGTATAGCTTTGGAGTAGTGGCACTTGAAACCTTAGTGGGAAGGCATCCTGAGGAAATATTGTCATCACTTCAATCACCATCAACTCAAGGCATCAAATTATGTGAAGTATTGGACCAACGGCTCCCATTGCCAAACAGGGCAGTTTTATTTGACATAGTTCGTGTTGCCANGGTAGCATTTGCATGCTTAAATACCAATCCTTGCTCTCGNCCAACAATGAAATGTGTGTCTCAATGTTTTCTTACTNAGCCAACACCATTAAGCATTCCTTTACATGAAATTTCACTACAGCAGCTCATGAGTCAAGAACTCAAAGCATTGTTTCAAATTGTGAACCCTTGAAAGCAAAACTTCAAAATAAAGTATTCTTTCTCAGGATTCAATAAAAGGCGT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00109	82504	85339	+

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.9.2

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0004713 protein tyrosine kinase activity

GO:0005515 protein binding

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000109s00010626.1	PF13855.1	LRR_8	109	167	2.10E-07
Glyur000109s00010626.1	PF13855.1	LRR_8	182	241	2.00E-08
Glyur000109s00010626.1	PF13516.1	LRR_6	300	315	1.5
Glyur000109s00010626.1	PF00560.28	LRR_1	326	348	0.082
Glyur000109s00010626.1	PF00560.28	LRR_1	397	415	1.3
Glyur000109s00010626.1	PF00069.20	Pkinase	552	814	4.20E-45

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.087
SRR1783600	control	0.089
SRR1783602	moderate drought stress	0.091
SRR1811619	moderate drought stress	0.101

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.556
DRR006520	Root Summer glycyrrhizin high producing strain	0.509
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.014
DRR006523	Root Summer glycyrrhizin low producing strain	1.993
DRR006524	Root Summer glycyrrhizin low producing strain	1.918
DRR006525	Leaf Summer glycyrrhizin high producing strain	5.386
DRR006526	Leaf Summer glycyrrhizin high producing strain	5.158

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.008
SRR2868004	Drought Stress (root)	0.132
SRR2967015	Control (root)	0.094

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	21.909
SRR9715740	Leaf	22.086
SRR9715741	Leaf	17.730
SRR9715739	Root	1.337
SRR9715742	Root	4.552
SRR9715743	Root	3.475

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.027
SRR8749028	MeJA induced 9h	0.039
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.024
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.498
SRR8400027	Control - Root	1.379