Gene detail

Gene detail information of Glyur000109s00010616

Functional Annotation

Database	Orthologs	E value	Annotation
NR	XP_007139594.1	0	hypothetical protein PHAVU_008G042900g, partial [Phaseolus vulgaris]
COG	YP_004097607.1	4.00E-113	pyrrolo-quinoline quinone repeat-containing protein [Intrasporangium calvum DSM 43043]
trEMBL	tr\|V7B3Y7\|V7B3Y7_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW11588.1} (Fragment)

Sequence

Transcript Sequence

>Glyur000109s00010616.1
ATGAAACCTCCTAAATACAACATAGGCACTGTTCTTAGCTTAGTGTTGTTAATTTGTGTTCATGCNGTACTAGTAGTAGTCTTTGCTGCAATCTCAGATGGGGTTGGAGAACAACCACAAGAGTGGTTAAACCATGGTGGGGATTTGTTCAACAGAAGATACGCTTACAGAGAGAGTAAGATCAGCCCCAAAACAGCACCGAACCTACGTTTGCAGTGGAAATTCTATGCAGGCAAAGACATCACTGCAACACCAGCCATATATGATGGAACCCTTTATTTTCCAAGCTGGAATGGTAACATATATGCGGTTAGAGAAGCCGATGGATCACTTGTTTGGAAGCAAAACTTGGAGAAATTGACAGGTTTCAATGCAACTGGGTTTGTTCTCAATGTGAATTGGACAGTGTCAAGGTCAANTCCCACTGTGGTTAGTGAGGATTTGCTGATTACTGGAATTTATGGCCCTGCTGCTGTTATTGGTCTCAAAAGAACCACTGGTGAGATGTTGTGGTTGACCACTTTGGATAACCATCCTGCAGCAATCATCACCATGTCTGGATCACACTACAACGGAGGTTACTATGTTGGAACATCATCACTAGAAGAAGGTGCAACCGTTGAACAATGCTGCACATTTCGTGGAAGCCTCGTAAAACTCGATCCCCAAACTGGTACCATCTTATGGAAGACCTACATGTTGCCAGATAACAATGGAAACAGAGAAGAATATGCAGGAGCTGCCATTTGGGGAAGCAGCCCCTCCATTGATGTATACAGAAACCATGTGTACATTGCCACTGGGAACCTTTACTCTGCCCCATTACACATACGCCAGTGTCAAGAAAGACAGAACAATAATCGAACTGTGCCTACTGAACCAGACGAGTGTGTTGAACCAGACAACCACTCCAATTCAATCTTGGCCCTTGATTTGGAACATGGGAATATCAGATGGTACCGCCAGTTAGGTGGCTACGATGTATGGTTCGTTGCGTGCATCAATGCTTCAGCTCCTAATTGCCCTCCTCAAGGTCCTGTCCCTGATGCTGATTTTGGGGAGGCACCAATGATGTTGACTGCATATGTAAATGGAACAAAGACAGATGTTGCTGTCGCTGTCCAGAAAAGTGGATTTGCTTGGGCATTAGATCGTGACAATGGCAACCTCCTTTGGTTTACGGAAGCTGGGCCGGGTGGGCTTGCTGGAGGTGGGACATGGGGTGCAGCAACAGATGAAAAGAGGGTTTACACCAACATTGNGAATTCGGAGGCCAAGAATTTCACTCTCTTACCATCAAATATGATTACAACCACAGGAGGGTGGGTGGCAATGAATGCCAGCAATGGCAAAGTTCTATGGTCCACGGCTAACCCCAGTAACAGTTCTGCTTATGGCCCTGTTAGTGTGGCCAATGAAGTTGTCTTNGCTGGGTCCGCGGATAGAGTTGGACACATATATGCAATGAATGCCAAGAATGGGAAAATCTTATGGTCCTATGAAACTGGAGGCAGTGTCTATGGAGGCATGTCAGTTAGCAATGGATGCATGTACCTGGGTCATGGATATAATGTTTCTCTAGGATCTGCCTTGAACTTGACCAGTGGAACCTCCCTCTTTGCCTTCTGTGTCTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00109	35080	37829	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000109s00010616.1	PF13360.1	PQQ_2	70	319	1.50E-14
Glyur000109s00010616.1	PF13360.1	PQQ_2	381	512	1.60E-11

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	5.814
SRR1783600	control	5.726
SRR1783602	moderate drought stress	3.596
SRR1811619	moderate drought stress	3.589

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.132
DRR006520	Root Summer glycyrrhizin high producing strain	0.131
DRR006521	Root Winter glycyrrhizin high producing strain	0.136
DRR006522	Root Winter glycyrrhizin high producing strain	0.132
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.000
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.000

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	28.345
SRR2868004	Drought Stress (root)	33.185
SRR2967015	Control (root)	22.836

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.306
SRR9715740	Leaf	0.754
SRR9715741	Leaf	1.332
SRR9715739	Root	10.019
SRR9715742	Root	5.334
SRR9715743	Root	5.384

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	5.160
SRR8749028	MeJA induced 9h	17.107
SRR8749029	MeJA induced 9h	12.705
SRR8749030	Uninduced	5.362
SRR8749031	Uninduced	14.826
SRR8749032	Uninduced	7.086

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	27.499
SRR8400027	Control - Root	19.781