Gene detail information of Glyur000108s00010450 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G35180.1 | 8.00E-72 | TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein |
| NR | AFK46468.1 | 2.02E-125 | unknown [Lotus japonicus] |
| trEMBL | tr|I3T1S6|I3T1S6_LOTJA | 8.00E-126 | Uncharacterized protein {ECO:0000313|EMBL:AFK46468.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00108 | 339393 | 343052 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000108s00010450.1 | PF03798.11 | TRAM_LAG1_CLN8 | 105 | 187 | 3.20E-11 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.085 |
| SRR1783600 | control | 3.422 |
| SRR1783602 | moderate drought stress | 2.056 |
| SRR1811619 | moderate drought stress | 1.903 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 5.594 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 6.177 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 3.329 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 3.499 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3.351 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 3.197 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 10.504 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 10.324 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 10.052 |
| SRR2868004 | Drought Stress (root) | 7.728 |
| SRR2967015 | Control (root) | 6.564 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 13.784 |
| SRR9715740 | Leaf | 11.203 |
| SRR9715741 | Leaf | 12.407 |
| SRR9715739 | Root | 3.282 |
| SRR9715742 | Root | 4.773 |
| SRR9715743 | Root | 5.184 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 19.202 |
| SRR8749028 | MeJA induced 9h | 5.976 |
| SRR8749029 | MeJA induced 9h | 16.047 |
| SRR8749030 | Uninduced | 7.359 |
| SRR8749031 | Uninduced | 6.418 |
| SRR8749032 | Uninduced | 4.860 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 13.387 |
| SRR8400027 | Control - Root | 12.450 |