Gene detail

Gene detail information of Glyur000108s00010442

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G09200.1	3.00E-44	Ribosomal protein L10 family protein
NR	NP_001238374.1	4.22E-57	60S acidic ribosomal protein P0 [Glycine max]
COG	NP_247485.1	1.00E-06	acidic ribosomal protein P0 [Methanocaldococcus jannaschii DSM 2661]
Swissprot	tr\|P50346\|RLA0_SOYBN	2.00E-59	60S acidic ribosomal protein P0
trEMBL	tr\|I1JI71\|I1JI71_SOYBN	4.00E-58	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA02G42260.2}

Sequence

Transcript Sequence

>Glyur000108s00010442.1
CTTTTCCGTAGAACAACTCAGTTATCCGTATTCTATTTCCCCTCTTTTCGTTTCTCCGCCTAACCCTAACCCTAACACCCCTTTGCACTGAGGTTAAAGAGACGGCACCGTCGTTGCTGTCCGCCTTGACCGAGTGAGTTCATTCATTCGTCTTGGCCCTCGATTTTGCTCCGTCAAACTCATACAGAGACCCAAAACATTCATCAGAATCAATGGCGGTGAAACCCACCAAGGCAGAGAAGAAGATTGCTTACGATGCGAAGCTGTGCCAGCTACTTGAGGAGTACACACAGATCCTCATCGTGAACGCCGACAACATTGGATCACAACAGCTCCAAAACATTCGAAAGGGTCTACGTGGCGACTCTATTGTCCTCATGGGTAAGAACACCATGATGAAGCGCTCTGTGAGGATGCACTCTGAGAGTACCGGCAACAAGNCCTTTCTCAACTTCATCCCCCTCCTTGTCGGAAATGTTGGGTTGATTTTCACAAAAGGTGATTTGAAGGAGGTTAGCGAGGAAGTTGCCAAGTACAAGGTCTTCCCCGCCTAATGAGATATTGTGGTTGCAATATTTTGTTTCTGCTGGCTTAATTTGATGTTATCATTGATTGTCCACACACTCATTCAATCGATGTCGTTGTTCCTCCTGGCAACACAGGTCTCGACCCCTCTCAGACCTCTTTCTTCCAGGTGCTTAACATTCCAACCAAGATTAACAAGGGTACTGTGGAAATCATTACCCCTGTGGAACTCATTAAGAAGGGTTGGTTCTTCTGAAGCTGCATTGCTTGCCAAGCTAGGCATAAGGCCCTTTTCATATGGTCTTGTGGTCCTTTCTGTCTATGATAATGGTTCAGTGTTTAGCCCTGAGGTTCTAGATCTTACCGAGGATGACCTCGTTGCGAAGTTTGCCGTTGGTGTCTCAATGGTTACTTTGCTTTCATTGGCCATCTCGTACCCAACACTTGCAGCTGCAGCTCCTCATATGTTTGTCAATTCCTGTAAGAATGTTCTTGCTGTTGCTGTGGAGACAGAGTACTCATTCCCTGAGGCAGACAAGGTTAAGGAGTACCTAAAGTTGCTGCACCTGCTGCCGATTCCTGTGCCGCCCCAGCTGCTGCTGCCAAGGAGGAGGAGAAGAAGGATGAGCCAGCTGAAGAATCTGATGATGACATGGGTTTCAGTCTATGGCAAGGCCCTTTGTGATGATGGCAAGGATGAGCCAGCTGAAGAATCTGATGATGACATGGGTTTCAGTCTGTCTACAGAAGTTTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00108	301987	305823	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000108s00010442.2	PF00466.15	Ribosomal_L10	7	64	4.00E-16

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	18.699
SRR1783600	control	18.733
SRR1783602	moderate drought stress	31.209
SRR1811619	moderate drought stress	30.680

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	13.414
DRR006520	Root Summer glycyrrhizin high producing strain	12.994
DRR006521	Root Winter glycyrrhizin high producing strain	43.025
DRR006522	Root Winter glycyrrhizin high producing strain	41.528
DRR006523	Root Summer glycyrrhizin low producing strain	8.731
DRR006524	Root Summer glycyrrhizin low producing strain	9.012
DRR006525	Leaf Summer glycyrrhizin high producing strain	10.736
DRR006526	Leaf Summer glycyrrhizin high producing strain	10.510

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	13.277
SRR2868004	Drought Stress (root)	14.924
SRR2967015	Control (root)	17.664

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	10.766
SRR9715740	Leaf	11.617
SRR9715741	Leaf	13.774
SRR9715739	Root	5.383
SRR9715742	Root	7.408
SRR9715743	Root	7.230

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	30.490
SRR8749028	MeJA induced 9h	15.930
SRR8749029	MeJA induced 9h	21.977
SRR8749030	Uninduced	11.248
SRR8749031	Uninduced	15.657
SRR8749032	Uninduced	21.130

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	21.023
SRR8400027	Control - Root	19.003