Gene detail

Gene detail information of Glyur000108s00010436

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G51030.1	8.00E-48	thioredoxin H-type 1
NR	XP_003589341.1	4.56E-66	Thioredoxin H-type [Medicago truncatula]
COG	NP_220054.1	3.00E-20	Thioredoxin [Chlamydia trachomatis D/UW-3/CX]
Swissprot	tr\|Q43636\|TRXH_RICCO	3.00E-64	Thioredoxin H-type
trEMBL	tr\|A1BLP7\|A1BLP7_MEDTR	2.00E-66	Thioredoxin {ECO:0000256\|PIRNR:PIRNR000077}

Sequence

Transcript Sequence

>Glyur000108s00010436.1
GTCGTGCATTGTATTCTCTGTCGTGCAAACTAAGCAAACAAGATTCGAAGAAAAATCAATTGGAAGAGATNAAAAATGGCGGAAGAAGAAGGNCAGGTGATCGGTGTCCACACCGTTGAGTCGTGGACGGAGCAGATCCAGAAAGGAAACGACTCTAAGAAACTGATTGTGGTGGATTTTACTGCTTCCTGGTGTGGTCCATGCCGATTCATTGCCCCAATTCTGGCAGAGATTGCTAAAAAGACACCCGAAGTCATCTTCCTCAAGGTGGATGTGGATGAATTGAAGAGTGTTGCTGAGGAATGGTCTGTTGAGGCCATGCCAACCTTCCTCTTCTTGAAAGAAGGCAAGCAAGTGGACAAGATAGTGGGTGCTAAGAAGGAAGAGCTGCAACTNACTATAGCCAAGCATGCAACTGTTGCTGCTGCTTAATTGAATTATCTTATAATGAAAGATCAAGAATAATAATACATTTAACATTTTCCAGTCAGTTTAATTTGCATGTTTTCATTATAGCTATATGCGTGGAAATAAATTGTTGCATTGTTCGTGCTTCAATTGACTATTGAGACTATATAAGATGATATTTGTATAATTAAGATATTTTGATGAAAAGGGTCGCTTTAGTTTTGATGATTGAAAATGGCAATAATTGGCAACCACCGAAATACACCTCTTGTATCAATCACGCGGGTTCTCCATCTTGATGCAAGATCAAGATTCAAGAATAGGAATCATAGAACCATATCAACCATTGAAACAAACCAAATACTAATTGAAGCTCAATTATAGCAAAAGCAAATAATACTAACTTATTCCTCAACTTTATATACCAAAATACCAAAAGAAGCCTGAGAATTCCACAAGTGCAAATATAACTTTTTTTTATTCTTCATAACTATGGCCCTGTGGATCAATCACCATTTGGCTTCTCATATTCCTTTTCTTTCAGTTCTTTGGAGTATGTATTGTCCTCTTTACCAGAGATATTTTCCAAGGATTCCCACCTANCTCCTCAAAAACTACTATCAAGTTATTTGTTGGCTTTAACCATGACCTAGGAACGTGGTACCTACAAAATTCCAAACAGAAAAATGGGTAAGTCTACTCTTCCATGGTCCAATAATACCTCAAAAGGTGCTTATAAATAAAGTGATTTTGGTGNCCCTGGATCTGGCACATTTAAACATTCAATAGTTTTCATTTGTGT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00108	284201	287142	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006662 glycerol ether metabolic process

GO:0045454 cell redox homeostasis

molecular_function
GO:0015035 protein disulfide oxidoreductase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000108s00010436.1	PF00085.15	Thioredoxin	10	112	2.10E-32

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	25.978
SRR1783600	control	26.458
SRR1783602	moderate drought stress	23.464
SRR1811619	moderate drought stress	22.759

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	44.435
DRR006520	Root Summer glycyrrhizin high producing strain	43.831
DRR006521	Root Winter glycyrrhizin high producing strain	4.988
DRR006522	Root Winter glycyrrhizin high producing strain	4.888
DRR006523	Root Summer glycyrrhizin low producing strain	96.998
DRR006524	Root Summer glycyrrhizin low producing strain	95.342
DRR006525	Leaf Summer glycyrrhizin high producing strain	154.183
DRR006526	Leaf Summer glycyrrhizin high producing strain	153.512

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	119.069
SRR2868004	Drought Stress (root)	97.620
SRR2967015	Control (root)	104.430

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	153.775
SRR9715740	Leaf	215.150
SRR9715741	Leaf	218.755
SRR9715739	Root	45.363
SRR9715742	Root	98.584
SRR9715743	Root	86.137

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	120.631
SRR8749028	MeJA induced 9h	131.822
SRR8749029	MeJA induced 9h	157.369
SRR8749030	Uninduced	260.713
SRR8749031	Uninduced	342.182
SRR8749032	Uninduced	340.416

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	87.112
SRR8400027	Control - Root	87.749