Gene detail

Gene detail information of Glyur000108s00010432

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G75500.2	8.00E-42	Walls Are Thin 1
NR	XP_007160706.1	6.75E-62	hypothetical protein PHAVU_001G010100g [Phaseolus vulgaris]
Swissprot	tr\|Q94AP3\|WAT1_ARATH	2.00E-48	Protein WALLS ARE THIN 1
trEMBL	tr\|V7CTX0\|V7CTX0_PHAVU	3.00E-62	Uncharacterized protein {ECO:0000313\|EMBL:ESW32700.1}

Sequence

Transcript Sequence

>Glyur000108s00010432.1
ATGGCTGATTTAGGCTCAGCCTCTTCAAAGAGAATGTGGTGTTCCTTCCCTGAAAGAGCCCAACTGCATGTGGCCATGTTGGCCCTGCAGTTTGGCTATGCTGGCTTCCATGTGGTCTCAAGAGCTGCTCTCAACATGGGTGTTAGCAAACTTGAAGGAGAGACCAGCGATTACCTTAAACTTCCTCTGCCAGTTCTTTCTCCTCGCACTTGTCGGGATAACAGCAAACCAAGGATAGAGCAAGTGAGACTGAATAGAAAGGATGGGGTGGCTAAGGTAGCAGGAACAGTGTTGTGTGTGATTGGGGCAACCGTGATTACCCTTTACAAAGGTCCAACAATATATAGTCCTGCTAATAATGTAAATAGCAGCATCACAACAGAACCAGTAGGAGTGGTGGCATCAGGAATTGCGTTCGCCGTACAAATATGGTGCATTGACAGGGGAGGCCCTGTGTTCGTTGCGGTGTATCAGCCTGTTCAGACTTTTGTTGTCGCCATTATGGCTTCCATTGCTTTAGGAGAAGAGTTCTACTTGGGCGGGATCATTGGGGCAGTGTTGATTGTTACTGGATTGTACCTTGTGTTGTGGGGTAAAAGTGAAGAGAGAAAATTTGCAAGGGAACAACTTGCTATTACATCCACTTCGGAACATGGAATCATTAGGCCCGCAAGCCACGCTAAAGCATCAATTACTCAGCCACTCCTCTCTTCATCAATCACAGAGAATAATGTCTGAATCAAGAAAACCCCATAAGTACTTCAAAACCACATCATCATCATCTAAAGAAAAAGAGAAGATATGATACCATACATTACTATTCCCCTTATGTCAGGAAGAAGCTTGTGTGTGTTTGAATGGGTTTTCATCTTTTTTCCTCTTTTTTTTNCTTCCTTGTTTTGATTTTATTTCAAATGCTTTCTTAGTAGATCATTTAGAATGAGAGATTTTGTGGGAATGATTGTAATGTTGGATGTCACTTTAAAGCGGGGCCTAGAGCCTGAAATCCCATATGCTTTTATATGTTAATTTATGGTTTTGGAAAACTATCGTTATGGCTTTGACCCCAATTAGGGATTTAGTTATGTTTCAAGCTCATTGTCGTTTTTTTTTG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00108	260703	264754	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

cellular_component

GO:0016020 membrane

GO:0016021 integral component of membrane

molecular_function
GO:0022857 transmembrane transporter activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000108s00010432.1	PF00892.15	EamA	130	196	1.20E-07

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	46.328
SRR1783600	control	45.576
SRR1783602	moderate drought stress	61.605
SRR1811619	moderate drought stress	62.999

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	147.036
DRR006520	Root Summer glycyrrhizin high producing strain	145.089
DRR006521	Root Winter glycyrrhizin high producing strain	0.494
DRR006522	Root Winter glycyrrhizin high producing strain	0.797
DRR006523	Root Summer glycyrrhizin low producing strain	148.555
DRR006524	Root Summer glycyrrhizin low producing strain	148.268
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.861
DRR006526	Leaf Summer glycyrrhizin high producing strain	3.700

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	298.324
SRR2868004	Drought Stress (root)	199.690
SRR2967015	Control (root)	185.114

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	3.816
SRR9715740	Leaf	0.177
SRR9715741	Leaf	0.991
SRR9715739	Root	35.680
SRR9715742	Root	74.736
SRR9715743	Root	62.359

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.476
SRR8749028	MeJA induced 9h	0.278
SRR8749029	MeJA induced 9h	0.971
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.051

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	121.065
SRR8400027	Control - Root	144.898