Gene detail information of Glyur000108s00010427 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G19790.2 | 3.00E-50 | SHI-related sequence 7 |
| NR | XP_003550407.1 | 2.01E-114 | PREDICTED: protein SHI RELATED SEQUENCE 1-like [Glycine max] |
| Swissprot | tr|Q9FXH7|SRS7_ARATH | 6.00E-76 | Protein SHI RELATED SEQUENCE 7 |
| trEMBL | tr|I1MY05|I1MY05_SOYBN | 7.00E-115 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA17G37410.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00108 | 230626 | 232440 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | SRS |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000108s00010427.1 | PF05142.7 | DUF702 | 126 | 283 | 1.50E-62 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 5.390 |
| SRR1783600 | control | 5.352 |
| SRR1783602 | moderate drought stress | 6.510 |
| SRR1811619 | moderate drought stress | 6.306 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.454 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.497 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.472 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.482 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.231 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.163 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.711 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.675 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 1.405 |
| SRR2868004 | Drought Stress (root) | 1.410 |
| SRR2967015 | Control (root) | 1.292 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.943 |
| SRR9715740 | Leaf | 0.433 |
| SRR9715741 | Leaf | 0.251 |
| SRR9715739 | Root | 3.280 |
| SRR9715742 | Root | 1.580 |
| SRR9715743 | Root | 2.777 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 7.995 |
| SRR8749028 | MeJA induced 9h | 3.492 |
| SRR8749029 | MeJA induced 9h | 3.705 |
| SRR8749030 | Uninduced | 1.239 |
| SRR8749031 | Uninduced | 0.004 |
| SRR8749032 | Uninduced | 0.214 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 3.493 |
| SRR8400027 | Control - Root | 3.982 |