Gene detail information of Glyur000108s00010422 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G24160.1 | 4.00E-176 | alpha/beta-Hydrolases superfamily protein |
| NR | NP_001241135.1 | 0 | uncharacterized protein LOC100789925 [Glycine max] |
| COG | YP_006866519.1 | 2.00E-19 | acetoin dehydrogenase E2 subunit [Psychroflexus torquis ATCC 700755] |
| Swissprot | tr|Q0J0A4|LPAAT_ORYSJ | 0 | Probable 1-acylglycerol-3-phosphate O-acyltransferase |
| trEMBL | tr|C6TEM2|C6TEM2_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA14G40620.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00108 | 180721 | 185567 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000108s00010422.1 | PF12697.2 | Abhydrolase_6 | 109 | 368 | 6.90E-34 |
| Glyur000108s00010422.2 | PF12697.2 | Abhydrolase_6 | 109 | 274 | 7.00E-24 |
| Glyur000108s00010422.3 | PF12697.2 | Abhydrolase_6 | 3 | 54 | 5.10E-06 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 6.497 |
| SRR1783600 | control | 6.353 |
| SRR1783602 | moderate drought stress | 8.087 |
| SRR1811619 | moderate drought stress | 8.457 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 9.994 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 10.147 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 5.055 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 5.292 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 21.158 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 21.844 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 19.571 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 20.654 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 13.762 |
| SRR2868004 | Drought Stress (root) | 20.109 |
| SRR2967015 | Control (root) | 18.518 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 42.446 |
| SRR9715740 | Leaf | 52.607 |
| SRR9715741 | Leaf | 53.472 |
| SRR9715739 | Root | 8.245 |
| SRR9715742 | Root | 16.205 |
| SRR9715743 | Root | 12.927 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 20.883 |
| SRR8749028 | MeJA induced 9h | 35.041 |
| SRR8749029 | MeJA induced 9h | 22.021 |
| SRR8749030 | Uninduced | 15.080 |
| SRR8749031 | Uninduced | 13.360 |
| SRR8749032 | Uninduced | 8.782 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 12.164 |
| SRR8400027 | Control - Root | 17.101 |