Gene detail

Gene detail information of Glyur000108s00010420.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G16310.1	0	LSD1-like 3
NR	XP_004499218.1	0	PREDICTED: uncharacterized protein LOC101504496 isoform X1 [Cicer arietinum]
COG	YP_007109585.1	9.00E-62	amine oxidase [Geitlerinema sp. PCC 7407]
Swissprot	tr\|F4JLS1\|LDL3_ARATH	0	Lysine-specific histone demethylase 1 homolog 3
trEMBL	tr\|G7I5Y4\|G7I5Y4_MEDTR	0	Polyamine oxidase {ECO:0000313\|EMBL:AES59624.1}

Sequence

Transcript Sequence

>Glyur000108s00010420.1
CTTCAACTTTGTGTTACTCACTGCCCTATAATACAACACTACTTATTCTTTTTCTTCTTCAATTAGGATTTTGATTTTTCATTGGAAACGCGAGCTTTAACTTTATCATCAGGATGGAGAAGTGGAAATCGACGGCATAGATAGAAGGAAACCATTCACCAATTTCCCTAGATTCTGTTGGAAAACCTAGGGCTAGCATAAATGGAGGGAGAAGATTTGAGGTCAGGGATGAAGAAGAGATCCAAACCAGTTGAAACTGGTTTTGATTTTGACTCAGAGAACGACGAGCCCATTGGGTCTATGCTTAAGCTAAGGAGGACCAAAAAGAAGAAGAAGAATAAGGTTAGTAATTTGGCATCAGAGGGCTCTTGTGGTGGTGACGATGCTATTAGGGTAAAAGAGGGTATTGGGGGTATGGATGATAATGATACCTTGGCTAGCTTTAGGAAGAGATTGAAGGGTCCAAAGAGAGATCAGGGATCTGAAGCCGCCGCAACCCTAGCTTTGAATGTTTCTCTTGAGGGTCATGAGGATGGTGGTTTTGTTGCTGGGGGATCCAGGAGTGCTTCGATGGACGAGAGAGTGGTGGGTTTGTTGCTTGGTGATGACATGCACCTGCATCATTCTTCTGATCAGCATATGGAAGACTCCTTGTCTGCAATTTTCCACAAGGCGCAATCTAATTCCTTTAGGAAATCCCGTGCCGCTTTGAGTTCGAAGCAGAAAAGAGGGAATCGGAATGTGGATAGTGTGTTGAGCCCTGGTTCCAAAAGTTTTACAGAAACTTTGGATTCTAGGGTTGAAAGTAGATCTGGATCTGCCTCGAAATCGGTTGGGGGGAATCTCGAGTCCGCTGCGGTTTCCTCAGTATCTGCGATGGATAATCAAAAGGGTGGTGATACAGCCAAGGGCATTTGTGATTCAAGAATTCCAGATGGACCATTAGTTGATCAGTCTCACTCAATCAACGTCTGCGATGGAGATAGGCAGCAATTGTCTTGTGTACAAGTTGAAGATGTTGTTTGTGGTGCTTCTGATGAGAAGGTTGCATTTCAAGAAAGAATTCTTGATAGTGGTTTAGATCAGTGTTCTGCCATGTTACGAGATGCTGAAAAAATTGATACTGCATCATCTCCCTCTAAAGTGGGGGAAGGGGTATGTGGATTTTCTGAGGCTGGAGAGCTTGATAATATATTGACCGATGAAATAGGACAAGAACCAGTTGGTAATGGTGCTTCAGAAGCAGGAGTTTCTACTTCTGCAGGGAAAGAAATTTTGTTAACTTCTTGTCGCACTGAGCCCTTGACCAAATCAGCCAAAAATATATTGAATGAGAATGAGAATAATTATATGGTTTCTGGAAAAGTTTTCCAGGAATCCTCAATAAATGGAGGTGCAAAATTGGAAACTGAGTTTGTTTCTGGTAGACATAGCTTTGATTATAGTAGTTTAGATACAAATGTTGATGTGAAAGATTTTGTTGTAAGCTGTTCACCTGAAAAACATGATATAATTGCCACTGGTAGTTCATCCTCTATCGTGCCTAATGAAGCCAATGAATCTGAACTGGCTGTTCAGTCAAATCACCCAGAGAAACCTTTGGAAATGTGTAACATTCCAAAATACTCTACCGCTTCAATTCTGAAATGCAGCTCTATGTTAGATCCAATTCAGTCTGGTGGATCCTTTATACGATCTTCAATTCCAGATGAAAATGGAAACACTGCTGAATATCATGCCTCTGTGTCTGATTTTGCTGACAATGATGGTAAGATATCAAGCATTCCTCGTGTGACACGAAAGACCAAAATGCGTAAGCATGGAGATATGACTTATGAGGGGGATGCTGATTGGGAGATTTTAATAAATGATAAAGCTGTAAATGAAAGCCAAGTTGCTGTAGATGGTGAACGCATTCTTAGAACAAGAGTAAAGCATGATTCCTCTGTGAATGCTGTTGAGGACTCTGAAAATGTTGCAGCAGCGGCAGTATCTGCTGGGCTGAAAGCTCGTGCAGTTGGACCAATTGAGAAAATAAAATTTAAGGAGATCTTGAAGCGTAAAGGTGGTCTCAAGGAATATTTGGATTGCAGGAATCAGATCTTAAATTTATGGAGCAGAGACGTCACACGTATTTTGCCTCTTGCTGAATGTGGAGTTAGTGATACTCGTTCTGAGGATGAAAGTCCTCGTTCTTCTCTTATTAGGGAGGTCTATGCATTTCTCGATCAATATGGTTATATAAATGTTGGGATTGCCTCTCAAAAGGAGAATGTTGGAAGTAGTGCAAGACATTGTTATAAACTTGTAAAAGAAAAAGGTTTTGAGGAAAGTTCCACAGCTTCATTGGCCGACTCTGAAGATGGAGTTTCCTTTATTGTTGGTCAGACTAAAATGTCAGATCCTTATATGGAGATTAATGATGGTCTAACAAAGGATTATGAAGACCTGACAACTGAAGCTACAGAAGGCATGAGGCATGGTAATGAAGCAATGATGGATTCATCAAACATGACACAACACAAAGAAATAAAAAATTGTGATTACCAGGAAAATGTTGGGATTCAGGACGGAATTAGTGGAACGATACATGTCAATGTTAACAGTTCTGTTCCCTCTTCCAAGTTTCCTGATTGCAGATTGACGTCTCTTGTGGCTACAGAGCAAATCAATGAATCTACCCTTGTTGTCTTAGGTGATCAGATAGGTGACACTCTGCAGTCTGATTTAGAGGCTAGAAAGAGAGTGATTGTCATTGGAGCTGGTCCTGCTGGGCTAACTGCTGCTCGCCACTTGCAACGTCAGGGATTTCCTGTAACTGTACTTGAGGCTAGGAATAGATTAGGAGGTCGTGTATTTACAGATCGCTCAGCTCTTTCTGTCCCTGTGGATCTTGGTGCTAGCATTATCACTGGTGTTGAGGCTGATGTGACCACTGAGAGAAGACCAGATCCTTCCTCATTGGTTTGTGCTCAGCTGGGCCTTGAGTTGACAGTGTTAAACAGTGACTGCCCTCTTTATGACACTGTGACAGGACAAAAAGTTCCTGCGGATATGGATGAAGCATTGGAAGCTGAATACAATAGTCTTCTTGATGACATGGTACTGGTTGTTGCTCAAAAAGGCGAACAAGCAATGAGAATGTCTCTTGAAGATGGTTTAGAATATGCCCTTAAGATTCGCCGTGTGGGATGCTCTGAAAGCAGTGAAGAAACTAAACAAAATAATTCTGCAGATAGTCCATTTGATTGCAAAAGGGAGGGTTCTATGGAACAAAAATTTGATGAGGAGATTTTGAGTCCTCAGGAGAGGAGGGTTATGGATTGGCACTTTGCTCATTTGGAGTATGGATGTGCTGCTTTGCTTAAAGAAGTTTCTCTTCCGTACTGGAATCAAGATGATGTGTATGGAGGATTTGGGGGAGCTCATTGTATGATCAAAGGAGGTTACAGCACTGTTGTTGAGTCTCTAGGAGAAGGGCTTGCTATTCACTTGAACCATGTCGTAACAAACGTGTCATATGGTATCAAGGAACCTGGCCAGAACAATAAAGTCAAAGTTTCTACGTCGAATGGCAATGAGTTTTTTGGAGATGCTGTCCTCGTTACTGTTCCACTTGGCTGTTTGAAGGCTGAAACTATACAATTCTCCCCTCCTTTGCCACAGTGGAAATGTTCTTCTGTTCAGCGTCTTGGTTTTGGAGTTCTCAATAAAGTGATTTTGGAATTTCCTACTGTGTTTTGGGATGATGCTGTGGACTACTTTGGAGCAACAGCTGAGGAGAGAAGCAAAAGAGGTCACTGCTTTATGTTTTGGAATGTCAGGAAAACGGTTGGGGCTCCTGTCCTTATAGCATTAGTGGTTGGTAAGGCAGCCATAGATGGTCAAAGTTTAAGCTCTTCTGATCATGTCAACCATGCATTGAAGGTTCTCCGTAGACTTTTTGGGGAGGCTTCAGTTCCTGATCCTGTTGCATATGTTGTGACTGATTGGGGTAGGGATCCTTATAGCTATGGTGCTTACTCTTATGTTGCTGTTGGAGCATCAGGAGAAGACTATGATATATTAGGAAGGCCAGTTGATAATTGCTTGTTTTTTGCTGGTGAAGCAACTTGCAAAGAGCACCCTGATACTGTTGGTGGTGCAATGATGAGTGGACTACGGGAGGCTGTTCGCATAATTGACATATTGAACACTGGAAATGATCATACTGCAGAGATAGAGGCATTGGAAGCTGCACTGGGACAGTTAGACACCGAAAGGGATGAAGTCAGGGACATAATAAAGAGACTTGATGCAGTTGAGCTTTCTAACATGTTGTACAAGAACTCTTTAGATGGTGCTCAAATCTTAACCCGGGAAGCTTTATTGAGGGAAATGTTCTTCAATGTGAAAACCAATGCTGGGCGCTTGCATGTGGCCAAACAATTGCTAAGTCTTCCTGTTGGAAACTTGAAGTCCTTTGCTGGAAGTAAAGAGGGGCTTACTGTTCTCAACTCATGGATCCTGGACTCAATGGGGAAGGATAGTACCCAACTCTTGAGGCACTGTTTGCGTCTTCTTGTACGTGTGTCAACTGATCTAGTTGCTGTACGCTTATCAGGAATGGGGAAAACAGTGAAGGAAAAAGTTTGTGTACATACTAGCCGTGATATTCGTGCTATAGCAAGCCAGTTGGTCAATGTATGGCTTGAAGTTTTCCGCAAAGAAAAAGCTTCTAATGGGGGATTAAAGTTGTCAAGACAAGCAACTACTATAGAATTATCAAAGAGAAAATGTGTAAAAGATTCAGCCTCAGGAAAGCCTCCTCTTAGCATACATCAGGGCACTGTTGAGAATAAAGGAGGCTTGCTGAATCCTGTATCAGCTGGAAGCAATTCACCTTCCACCGCACATGTGAAGAAATTGCACAGCAAGCAAGGAAGACAACAAGCAGCATATGACTCAAGGAATGAGGTCAGTTCTTCCAGGTCTCAGGGTTCAATAGACAAAGTAGTTACTGAGAAGGAAGATAACCACCATGCTTTGTCTGAAGAAGAAAAGGCTGCTATAGCTGCTGCAGAAGCTGCCCGTGCTAAAGCAATTGCCACTGCTAAGGCATATGCCTCTGCAGAAGCCAGGTGCAATACACTGTTACAGCTTCCAAAGATACCCTCATTCCAAAAATTTTCGAGACGGGGGCAGTGTTCACAAAATGATGAGTGTGATAGTAGCAAAAAGTGGTCTGGTGGTGTTTTTGGAAGGCAAGATTGTGTTTCTGAGATTGATTCTAGAAGTTGCAGAGTTAGGGACTGGTCTCTTGATTTCTCCACTGCTTGTGTTAATCTTGAAAATTCTAGAATGCCAGTTGACAACCTCTCACAGAGGAGTCATTCAAATGAGATTGCCAGCCATTTGAATTTCGGAGAGCACTCAGGCGAAAGTGTTGCTGTAGACAGCAATATATATACAAAAGCTTGGATTGACTCAGATGGTGGTGTCATAAAAGACCATCGTGCAATAGAGAGATGGCAATCTCAAGCAGCTGCAGCTGATTCTTATTGTTCCAATCCAACCATTCATTTGAAGGACGAGGAGGATTCAAATGCCTATTCAAGGTTACCCAGCTGGAAATGTGATGGTATGGCAAATGAGAGTTCTATTTCACAGGTTACTGTAAATAAGGAGGCCTTCAAAAGTCATTCTCGAGGAGCAGATCATATTAAACAGGCTGTTGTTGACTATGTTGCATCACTACTTATGCCCCTTTATAAGGCAAGGAAACTAGACAAGGATGGATACAAGGCTATAATGAAGAAAAGTGCAACAAAGGTCATGGAGCAAGCAACAGATGCAGAAAAAGCCATGACTGTTCACGAGTTTCTAGATTTTAAGCGAAAGAATAAGATTCGCTCCTTTGTGGATATATTGATTGAGAGACACATGGCAATGAAATCAGATAAGAAGTCTTAATATTCTTTCGATCGAATAGCCTGTTCTTTTTTGTACTTCTGTGGGAAGGGTTGCCCGAGTCTGGTTCTCCTACAGTTCTCAGAGTTTTGGTGGTCAAAGGCATGTTCTCATGAGCACTTCAATCTGCCAATATAAATGATCCAGAAGCTGCAATTAAAGAAATAGATGAAAATCGATCTTGCAACCGTGAAGAGGATACTAAATTCTTATGATGGATTAGTAAACTGGCTCAGTGCTAATATCAGTTAGATCTTCCGGGTTACATGCATCAGCAGGTTTGAAGATGACAACAGATTGCAGTCATCCGTCCTTTAATATTTCATCTTTCATCGAGGTTCATACCTCCGAGGGTTGAAAACTTAGACCCCATTTTTATTGAAGGGGTTTCTAATGGGCAAACATTAATTGACCTTATCAAATTTCTTCTATTTGTACAGCCTAGGATTGTTCTAGTGATGACAAGTATACATAATCCATTTCCCATGTTCTTCTAGAAATATTTTTCTTATTTAATTTTGCACCAATCACTAACTTTTTCTTTTCATTCTCCATAGTGTGGGGAGTAAGTTTGCTAGCTTTTGTAACATACTTGGTTACTTCAATAATTTTTTCCTCCATGTGTCTCTCCTTGTTTGTTCATGGTGCGCGCGAGTACCTTGTCTATTTATAGTTGAGTCAGCTTCCAAGTTTGTGCTTTAAAAAGTGAATAGAAGCTTCTCATCCTTAGCAAACAAGCCTTTCAATTTAGCTATTATTATGGTTCAAAGGATTGTGCCATGAGATGCCCAACAGCTCAGGCTGAGAAAGATTATATGTCAATCACAGATGGGAGTAATACGTACTTCCCTGTGATTTGGTGTTTATTGCAACTCTTAACAGCCAAATTTCAGGTGCCTTCTGTTTTCATTATTTTATGNCCCTTCATTCTAATGCAATGCCCCTCTTGGTGTTTGAGGTTGATGACCCTGTTATGTTTCTATTTCTTTTTGTTTCTGCTGCAGAATGCGCTGTCTTCATGCCAGCAGTATGTAATATTGGATTAAAAAATATAGCTGCCAGGGAAATTATATCCCATTGGCTGTATCCAGGGGGGATTGTCCATAAGTGAAGCAATTTCAAGCTGCCTGCATACCCAATAGAAAATCATCCTCGTTATTATTTTGGGGTGCAATTTTGGTGTTACTCCATACCATTTCGAAACTCTCATTTTATGGGGACAGGGTTGCATGATTCCTATACAGTTGTTTTCTCGTATCATGAGGATGCTTCGTTATAAGATTTTTCAACCGTTT

Protein Sequence

>Glyur000108s00010420.1
MEGEDLRSGMKKRSKPVETGFDFDSENDEPIGSMLKLRRTKKKKKNKVSNLASEGSCGGDDAIRVKEGIGGMDDNDTLASFRKRLKGPKRDQGSEAAATLALNVSLEGHEDGGFVAGGSRSASMDERVVGLLLGDDMHLHHSSDQHMEDSLSAIFHKAQSNSFRKSRAALSSKQKRGNRNVDSVLSPGSKSFTETLDSRVESRSGSASKSVGGNLESAAVSSVSAMDNQKGGDTAKGICDSRIPDGPLVDQSHSINVCDGDRQQLSCVQVEDVVCGASDEKVAFQERILDSGLDQCSAMLRDAEKIDTASSPSKVGEGVCGFSEAGELDNILTDEIGQEPVGNGASEAGVSTSAGKEILLTSCRTEPLTKSAKNILNENENNYMVSGKVFQESSINGGAKLETEFVSGRHSFDYSSLDTNVDVKDFVVSCSPEKHDIIATGSSSSIVPNEANESELAVQSNHPEKPLEMCNIPKYSTASILKCSSMLDPIQSGGSFIRSSIPDENGNTAEYHASVSDFADNDGKISSIPRVTRKTKMRKHGDMTYEGDADWEILINDKAVNESQVAVDGERILRTRVKHDSSVNAVEDSENVAAAAVSAGLKARAVGPIEKIKFKEILKRKGGLKEYLDCRNQILNLWSRDVTRILPLAECGVSDTRSEDESPRSSLIREVYAFLDQYGYINVGIASQKENVGSSARHCYKLVKEKGFEESSTASLADSEDGVSFIVGQTKMSDPYMEINDGLTKDYEDLTTEATEGMRHGNEAMMDSSNMTQHKEIKNCDYQENVGIQDGISGTIHVNVNSSVPSSKFPDCRLTSLVATEQINESTLVVLGDQIGDTLQSDLEARKRVIVIGAGPAGLTAARHLQRQGFPVTVLEARNRLGGRVFTDRSALSVPVDLGASIITGVEADVTTERRPDPSSLVCAQLGLELTVLNSDCPLYDTVTGQKVPADMDEALEAEYNSLLDDMVLVVAQKGEQAMRMSLEDGLEYALKIRRVGCSESSEETKQNNSADSPFDCKREGSMEQKFDEEILSPQERRVMDWHFAHLEYGCAALLKEVSLPYWNQDDVYGGFGGAHCMIKGGYSTVVESLGEGLAIHLNHVVTNVSYGIKEPGQNNKVKVSTSNGNEFFGDAVLVTVPLGCLKAETIQFSPPLPQWKCSSVQRLGFGVLNKVILEFPTVFWDDAVDYFGATAEERSKRGHCFMFWNVRKTVGAPVLIALVVGKAAIDGQSLSSSDHVNHALKVLRRLFGEASVPDPVAYVVTDWGRDPYSYGAYSYVAVGASGEDYDILGRPVDNCLFFAGEATCKEHPDTVGGAMMSGLREAVRIIDILNTGNDHTAEIEALEAALGQLDTERDEVRDIIKRLDAVELSNMLYKNSLDGAQILTREALLREMFFNVKTNAGRLHVAKQLLSLPVGNLKSFAGSKEGLTVLNSWILDSMGKDSTQLLRHCLRLLVRVSTDLVAVRLSGMGKTVKEKVCVHTSRDIRAIASQLVNVWLEVFRKEKASNGGLKLSRQATTIELSKRKCVKDSASGKPPLSIHQGTVENKGGLLNPVSAGSNSPSTAHVKKLHSKQGRQQAAYDSRNEVSSSRSQGSIDKVVTEKEDNHHALSEEEKAAIAAAEAARAKAIATAKAYASAEARCNTLLQLPKIPSFQKFSRRGQCSQNDECDSSKKWSGGVFGRQDCVSEIDSRSCRVRDWSLDFSTACVNLENSRMPVDNLSQRSHSNEIASHLNFGEHSGESVAVDSNIYTKAWIDSDGGVIKDHRAIERWQSQAAAADSYCSNPTIHLKDEEDSNAYSRLPSWKCDGMANESSISQVTVNKEAFKSHSRGADHIKQAVVDYVASLLMPLYKARKLDKDGYKAIMKKSATKVMEQATDAEKAMTVHEFLDFKRKNKIRSFVDILIERHMAMKSDKKS

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00108	154952	165612	+

Gene family

Gene family	subfamily
Transcription Factors Family	SWI/SNF-SWI3

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006351 transcription, DNA-templated

GO:0055114 oxidation-reduction process

cellular_component
GO:0005634 nucleus

molecular_function

GO:0003677 DNA binding

GO:0005515 protein binding

GO:0016491 oxidoreductase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000108s00010420.1	PF04433.12	SWIRM	593	682	7.90E-11
Glyur000108s00010420.1	PF01593.19	Amino_oxidase	857	1327	1.20E-104

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	7.828
SRR1783600	control	7.897
SRR1783602	moderate drought stress	8.509
SRR1811619	moderate drought stress	8.400

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	10.162
DRR006520	Root Summer glycyrrhizin high producing strain	9.998
DRR006521	Root Winter glycyrrhizin high producing strain	8.482
DRR006522	Root Winter glycyrrhizin high producing strain	8.179
DRR006523	Root Summer glycyrrhizin low producing strain	10.777
DRR006524	Root Summer glycyrrhizin low producing strain	10.812
DRR006525	Leaf Summer glycyrrhizin high producing strain	5.984
DRR006526	Leaf Summer glycyrrhizin high producing strain	5.917

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	17.658
SRR2868004	Drought Stress (root)	18.376
SRR2967015	Control (root)	18.337

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	10.093
SRR9715740	Leaf	10.653
SRR9715741	Leaf	11.502
SRR9715739	Root	1.484
SRR9715742	Root	15.124
SRR9715743	Root	13.785

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	16.696
SRR8749028	MeJA induced 9h	17.476
SRR8749029	MeJA induced 9h	12.716
SRR8749030	Uninduced	14.079
SRR8749031	Uninduced	17.426
SRR8749032	Uninduced	11.752

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	15.532
SRR8400027	Control - Root	16.533