Gene detail

Gene detail information of Glyur000108s00010416

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G11130.1	1.00E-67	Clathrin, heavy chain
NR	XP_004500501.1	4.22E-76	PREDICTED: clathrin heavy chain 1-like [Cicer arietinum]
Swissprot	tr\|Q2RBN7\|CLH1_ORYSJ	4.00E-77	Clathrin heavy chain 1
trEMBL	tr\|W5FDB1\|W5FDB1_WHEAT	6.00E-77	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Traes_5BL_73E7476C2.1}

Sequence

Transcript Sequence

>Glyur000108s00010416.1
ATGTCGTGGGAAGCGAACGGATTTCGGTTACGAGAAAGACTTCGACAAGAGATTCTCTCTCGGGCACGGACAATTCAGTTACACCAATGTCGGAATCGATTAAGAGAATGGGGATCGCGTTGCCGTCAAGAGACTCGAGAAGAACAAGTTGTAATGCCTACTGATTCCCACTGCATTTCTTGTGAGAAGAATGGCGTCAAGAAAGGGCCATGGACGGACAATCGAGGTGGACCAGAAACTCAACCGTCGCAAGACACAGAACCGCAAAACGACTTCGGAAACGGTGAACTGAGGTGTTTCTGGGACTTGATGGTATATTGTTTAGCAGTTCATTTGGTGAATGATAACTTCTTTATAAAGCATTGGATGCTGTTCAATAGAGGAGAGAAGAGGGAAGGAAGGCCTCCGGCCCAGATATGTGGACTCAACATTATTATNCAGGTGGATGACTTGGAAGAGGTCAGTGAGTATTACCAAAATGAGTTAATATCTGTCATGGAGAGTGGTTTAGGGTTAGAACGAGCTCATATGGGCATCTTCACTGAGTTAGGAGTTCTTTATGCTAGATACCGCCCTGAGAAGCTTATGGAGCATATCAAACTATTCTCAACCCGCCTCAATATTCCAAAACTCATAAGAGCTTGTGATGAACAACAACATTGGAAAGAATTGACCTATTTGTATATCCAATATGATGAGTTTGATAATGCTGCAACTACCATCATGAACCATTCACCTGAAGCTTGGGATAACATGCAATTCAAAGATGTTATTGCCAAAGTTGCTAATGTTGAGTTGTAATACACGGCTGTCCACTTCTATTTGGAAGAGCATCCAGATCTTATCAATGATGTTCTGAATGTCCTTGCACCTCGCGTGGACAATGCACGTTTTGTTGACATCATGCGTAAGGCTGGTTACCTCTGTCTTGTGAAGCCATACATGGTTGCAGTTCAAAGCAGCAATGTATCTGCTGTTAATGAAGCCTTGAATGAGCTATATGTTGAGGAGGAAATTATGATAGATTGCGTGAGTCAATTGATTTACATGATAACTTTGATCAAATAGGCCTTGCACAAAAGATTGAAAAGCATGAGCTTCTAGAGATGAGACGTGTTGCTGCTTATATTTACAAGAAGGCAGGTAGGTGGAAGCAGTCCATTACTTTGTCAAAGAAGGATAACCTTTACAAAGATGNCATGGAGACAGCCTCACAATCTGGAGAGTGTGAACTTGCTCAGGAGTTGCTTGTTTATTTNATTGATCAGGGAAAGAAGGAAGGCTTTGCCTCATGCCTGTTCGTTTGCTATGATTTAATACGGGCAGACATCGTTCTTGAACTAGCTTGGATGCACAACATGATTGACTTTGCCTTCCCATATCCCTTGCAGTTTATCCGTNAGTATACTGGAAAAATTGATGAACTAGTGAAGGACAAAACTGAAGCACAAAACGAAGAGAAGGCTAAAGAGAGAAGAAAAGCAAGTAGTTGCACAACAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00108	105973	109508	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006886 intracellular protein transport

GO:0016192 vesicle-mediated transport

molecular_function

GO:0005488 binding

GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000108s00010416.1	PF00637.15	Clathrin	152	266	4.20E-21
Glyur000108s00010416.2	PF00637.15	Clathrin	40	108	7.50E-10

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.212
SRR1783600	control	2.290
SRR1783602	moderate drought stress	2.113
SRR1811619	moderate drought stress	2.212

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.755
DRR006520	Root Summer glycyrrhizin high producing strain	0.909
DRR006521	Root Winter glycyrrhizin high producing strain	1.309
DRR006522	Root Winter glycyrrhizin high producing strain	1.110
DRR006523	Root Summer glycyrrhizin low producing strain	3.324
DRR006524	Root Summer glycyrrhizin low producing strain	3.382
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.292
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.219

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	4.985
SRR2868004	Drought Stress (root)	5.290
SRR2967015	Control (root)	5.439

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.323
SRR9715740	Leaf	0.328
SRR9715741	Leaf	0.498
SRR9715739	Root	0.320
SRR9715742	Root	1.826
SRR9715743	Root	1.326

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.114
SRR8749028	MeJA induced 9h	6.062
SRR8749029	MeJA induced 9h	0.619
SRR8749030	Uninduced	0.450
SRR8749031	Uninduced	0.136
SRR8749032	Uninduced	0.164

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	9.048
SRR8400027	Control - Root	7.126