Gene detail information of Glyur000108s00010415 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G40030.2 | 4.00E-67 | Histone superfamily protein |
| NR | XP_002985522.1 | 8.88E-83 | hypothetical protein SELMODRAFT_269004 [Selaginella moellendorffii] |
| Swissprot | tr|Q71H73|H33_VITVI | 4.00E-85 | Histone H3.3 |
| trEMBL | tr|A0A061FN33|A0A061FN33_THECC | 3.00E-83 | Histone H3 {ECO:0000256|RuleBase:RU004471} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00108 | 96223 | 97894 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000108s00010415.1 | PF00125.19 | Histone | 58 | 123 | 2.10E-24 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 131.857 |
| SRR1783600 | control | 133.069 |
| SRR1783602 | moderate drought stress | 150.040 |
| SRR1811619 | moderate drought stress | 149.447 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 175.346 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 174.427 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 483.678 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 470.749 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 431.861 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 433.048 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 108.134 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 107.607 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 276.583 |
| SRR2868004 | Drought Stress (root) | 335.249 |
| SRR2967015 | Control (root) | 323.081 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 197.251 |
| SRR9715740 | Leaf | 203.817 |
| SRR9715741 | Leaf | 281.707 |
| SRR9715739 | Root | 141.257 |
| SRR9715742 | Root | 147.175 |
| SRR9715743 | Root | 138.165 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 474.070 |
| SRR8749028 | MeJA induced 9h | 449.731 |
| SRR8749029 | MeJA induced 9h | 717.247 |
| SRR8749030 | Uninduced | 677.585 |
| SRR8749031 | Uninduced | 992.325 |
| SRR8749032 | Uninduced | 1139.812 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 295.113 |
| SRR8400027 | Control - Root | 248.663 |