Gene detail information of Glyur000108s00010414.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G42520.1 | 5.00E-102 | basic pentacysteine 6 |
| NR | KHN45906.1 | 0 | Protein BASIC PENTACYSTEINE6 [Glycine soja] |
| Swissprot | tr|Q8L999|BPC6_ARATH | 9.00E-153 | Protein BASIC PENTACYSTEINE6 |
| trEMBL | tr|I1JT52|I1JT52_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA04G02860.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00108 | 88175 | 91342 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | BBR-BPC |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000108s00010414.1 | PF06217.7 | GAGA_bind | 1 | 339 | 1.80E-118 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 56.078 |
| SRR1783600 | control | 53.959 |
| SRR1783602 | moderate drought stress | 62.556 |
| SRR1811619 | moderate drought stress | 62.665 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 84.829 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 86.374 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 61.733 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 59.896 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 111.523 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 107.471 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 30.174 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 31.205 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 57.070 |
| SRR2868004 | Drought Stress (root) | 61.553 |
| SRR2967015 | Control (root) | 69.249 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 34.493 |
| SRR9715740 | Leaf | 43.983 |
| SRR9715741 | Leaf | 45.400 |
| SRR9715739 | Root | 29.046 |
| SRR9715742 | Root | 51.746 |
| SRR9715743 | Root | 46.746 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 109.532 |
| SRR8749028 | MeJA induced 9h | 96.984 |
| SRR8749029 | MeJA induced 9h | 85.419 |
| SRR8749030 | Uninduced | 50.317 |
| SRR8749031 | Uninduced | 50.605 |
| SRR8749032 | Uninduced | 43.025 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 71.239 |
| SRR8400027 | Control - Root | 66.421 |