Gene detail

Gene detail information of Glyur000108s00010411

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G19870.1	3.00E-86	IQ-domain 32
NR	XP_004499268.1	0	PREDICTED: protein IQ-DOMAIN 32-like [Cicer arietinum]
Swissprot	tr\|Q9FXI5\|IQD32_ARATH	1.00E-99	Protein IQ-DOMAIN 32
trEMBL	tr\|G7I6H0\|G7I6H0_MEDTR	0	IQ calmodulin-binding motif protein {ECO:0000313\|EMBL:AES59647.1}

Sequence

Transcript Sequence

>Glyur000108s00010411.1
GGGATGACGGAAAACGGACTTGAAAGCAAAATATTAAGCTAGATTTAAGGAGTGTGTTGAGGTCCGTGGTTTTTAAGCTTTACCTTCGTTACATTTTCCCATATACGGTTAACTGCGAGGTTGGTCTTTTTTTTTTTTTGTTCGCAAAAGAGAGTAGTGTGAAGTGTGAGAGACACACATACACAGAGAGAGAGAGAGAGAGAGAGAGAGCTATGGGGAAATCTAACTCGTGCTTCAGATTAATCACATGCGGCGGTGATTCGGCGGAGAAAGATGTTCACCACCAAGTAGTATCGGAGGTCAAGGATTCTAATGATAAACGCGGTTGGAGTTTTCGGAAGAGATCTGCAAGGCATCGTGTGCTTAGCAATACNGTGATTACAGAGACTCCATCTTCTGTGAACAAGGAGATTTCGGAATGTGCAAGCATTAATTTTCAATCGCTGCCCGAACCTAATGTTGTTGAAAAGATTNGTACAACAAAATTCTCTGATGAGAAGCCCCAGTTATCCTCCATGGAAAACTCAGAAGTGCCGGAAACAATTGTCACTGAAACTGAGGGTAAAGTGGATGCCGATTTACTGGAATCTGTTGTGGTCATCATCCAGGCTTCCATTAGAGGATATTTGGCTCAGAGAGCACTGCTAAAGAGTAAGAATGTAGTGAAGTTGCAAGCTGCTGTTCGCGGGCACTTGGTCAGGAGGCACGCTGTAGGAACATTGAGATGTGTTCAGGCTATTGTTAAAATGCAGCTCCTTGTGCGATATCGACATGCTCAGCAGTCACATTCAGAGGATCATTTGAATAACAAGGATGGCAAAAACAATTGCTTAAAAGCTTTGGGTAATGAGCATCTCATGACCAAATCAAATGTGANAAACACATCCATGGAAAAGCTTCTCAGCAATAAGTTTGCTCGTCAGCTGTTGGAATCAACACCAAAAAAGAAACCTATTCTTGTCAAATGTGATCCTTCTAAAGCTGATTCTGCTTGGAAATGGTTGGAGAGATGGATGTCTGTTTCAGCAAAAGATTCTGTAGAGTACAACAAACCAATCTGTATGTCAGAACAATCTGTACAAAAAACTCATCCGTCTGAAGTTATTCTTCCGTTAGCTGACTCAAAGGCTACTGCTGGGGATTCACCTCTGCCGTCTNAGGATGAAGAGAAGGCCGTTACTCATGATGCTAACAACTCAAACTTTCAAGCAAGCCCCTCTACATCTTCTCTTGTAAAAGATAACTTGGAAGAGGCTCCTTCGGGAAAGACGATTACAGATGATGCTAAAGCAACCTCAACTGAAATTGATTCTTTCCAAAATGAAAAAATGGAATCCGATACAAGTGTCCCACAGGAGCCTAGTCCTCCTCCTCCGAAGCCTNAAATTGATGATGAACAGTGCCAACAATCTGTTGAAACATTTGGCTCAGACCAACTAGAGACTGAGNAAATGAAATTTGCACATGGATCAAAGAAGTTCAGTAATCCTGCAACTATTGCTGCACAATCAAAATTTGAAGAGCTGACTTCGATGGCAAATTNGGGTAGGTCAAGCAGCTTGTCCAATCAAGATGTATCAGTTGAATCACAAGCAGACACCTCTTCAGTTGTCATAGATACTGCATTTAGATCAAAAGAGTTATTCTCATCTGAGAATTNTGCTCCCTATCCTTCCAGAGTTGGTGGTTCTGAATGTGGTACCGAACTCTCTATTTCTTCAGCTCTTGATTCACCTAACAGATCAGAGGTTGGGACTATGGAAAGTGAGCATGATGCCAAAGATTTGGTAGAAGGGACTGTTAATCCTGAAAACAATATCAATCACAGTGTTGAGGCCAATACTCATTGTGCCACTCCNACTTCTAACTTACCTATCTCTGATTCGGATCAATTAGAAATTGTTAATGACACCAGTGGCGATATTGTTAATCCAGCCGTGCCAGGGAACTCTAAAGAGCCTGCTGTTGAGCCTGAGAAAAATTCATCTGACCTGTTGAGAGAGCAGAAAGAGACCGCTTTGCCAGATTTCAAGTTGTCTCCAGAAGCTTCACCAGGAAGCCATATGGCCATCTCTGAATCTCAAGGCACACCTTCGAGTCAGGTTTCTGTGAAGCCTAAGGGGAACAAAACCAACAAGACTGGATCAAGCAGTAGACGCAGGGTACTATCTGTTGGTAACAAGTCTCCTGCGAATGCAAATCATGATTCCGGCGGCTCAAGAGGTAGTAGAGAACAATTGCCTAAGGATCAGATGAATGGAAAGAGGCGCAATTCCTTTGGCCCAGTAAAACCTGATCACATTGATCAAGAACCTAGAGATGATNGTAGTAGTAACAACAATAGTCCTATTCCCCGTTTCATGCAAGCTACAGAATCTGCTAGGGCCAAGATGAATGCAAATAACTCTCCGAGGTCGAGTCCGGATGTAAATGACCCTGACATTTACATTAAGAAGAGACATTCCTTACCTGGTGCAACTGGTAGGCAGGGTTCTCCACGCGTCCAACGACCAACATCTCAAGCTCAGCAGGGCACAAAGGGCAATGCTTCTCATGAGAGAAAATGGATGAGGTGAATTGACACGACAGCTCAAGTGTGTTCATNTATGACTCTACAACGGTTGATGATGAATCTGGATTGGTACAGTGGCAGTCTATATAGTTCTGATTACAGTTGTATTCTTTGCCTCCCCTCCCTACCCCAAAATTCATAGCTATGTCTTGGAACATTTATAGAAGACTAAAAACTACAAAGTGGGTGTGTCTGGGTTGAGAGGCTTAATATATGTACATTATTGTTTGTTCTCCTCACTGTTGTTATTGTTGTGTCACACTCGGTCTGGTACGATTTGTTATGTTCCAGGCTACTTATACTTTGCTTGTGATGTCACTTTGTGTTTAAGAATGTTTTGTTTGTCTGAGGTATCTACATCTTATTTTTTTCATAGCCGTTGTCTGGTTGTATAATAAGCTGAATATTTGTATTTTGATTTCCA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00108	58169	64540	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000108s00010411.1	PF00612.22	IQ	128	144	0.0056
Glyur000108s00010411.1	PF00612.22	IQ	148	165	0.00062
Glyur000108s00010411.1	PF13178.1	DUF4005	682	769	9.50E-06

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	31.943
SRR1783600	control	32.090
SRR1783602	moderate drought stress	35.036
SRR1811619	moderate drought stress	34.828

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	36.043
DRR006520	Root Summer glycyrrhizin high producing strain	35.670
DRR006521	Root Winter glycyrrhizin high producing strain	20.177
DRR006522	Root Winter glycyrrhizin high producing strain	19.639
DRR006523	Root Summer glycyrrhizin low producing strain	45.818
DRR006524	Root Summer glycyrrhizin low producing strain	46.069
DRR006525	Leaf Summer glycyrrhizin high producing strain	10.311
DRR006526	Leaf Summer glycyrrhizin high producing strain	10.216

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	57.916
SRR2868004	Drought Stress (root)	58.452
SRR2967015	Control (root)	55.811

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	13.962
SRR9715740	Leaf	15.290
SRR9715741	Leaf	17.107
SRR9715739	Root	9.476
SRR9715742	Root	32.365
SRR9715743	Root	28.660

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	61.940
SRR8749028	MeJA induced 9h	37.428
SRR8749029	MeJA induced 9h	41.152
SRR8749030	Uninduced	10.671
SRR8749031	Uninduced	5.801
SRR8749032	Uninduced	8.033

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	63.613
SRR8400027	Control - Root	62.637