Gene detail

Gene detail information of Glyur000108s00010410.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G67240.1	7.00E-116	small RNA degrading nuclease 3
NR	AFK41173.1	0	unknown [Lotus japonicus]
COG	YP_001568509.1	6.00E-06	DNA polymerase III PolC [Petrotoga mobilis SJ95]
Swissprot	tr\|Q8RXK2\|SDN3_ARATH	3.00E-135	Small RNA degrading nuclease 3
trEMBL	tr\|I3SLN1\|I3SLN1_LOTJA	0	Uncharacterized protein {ECO:0000313\|EMBL:AFK41173.1}

Sequence

Transcript Sequence

>Glyur000108s00010410.1
CGCTCACTAACTTTTCTCTATCGNTAAACCCTATTATTCGAGCAGAGAGCGCGCGCCACCACCGCCATTGCAACGGTCAACCTCAGTAGTTAACGTCACTCTCCTTCACCTTCCGCCTGTGTATTTGTAGCTTCTCTACTTCTCTCAGCTCTACTTGTATAATCAGGTTTTGTATAATATGGAAGACAAGATAGACACTGCAGACAAAAAGGTGCTNGTTGATATAGTAAAATTGGCACAAAAAAGAGGCCTGAAGGGTGAACTGGGAGACTGGAAAGAATTCTTGAATAGTCATGATAAAAGATTTGGGGCAAATGTGAGTGATCCAGCAAAGAGGCCCCATGAGATATTGGCTGCATTTCTAAAGACATTTTCAAGGGATGATGATTTGAAGTTTTTTCGTAACGTCATGCGGCATCATTCAAACCAATACATGGTNGAGAAACTGAAAGATAAATCTCATGTTTCGCCTGAGCAGGTATCGCAGAAGCTAGTCCAAGTAACCCTCCAGCACCCATTGTATCCGTTGGATTATTCATTTCCATCAATTGATGAGGAATGGGTAATTATAAACCTTATCAACAAAACTAAGTCGTTGAAATCTACTGCAATGGTTGCTGTTGATTGTGAAATGGTTCTCTGTGAAGATGGCACTGAAGCTTTAGTTAAAGTCTGTGTGGTAGACCACAATTTAGAGGTCAAACTACACGAACTTGTAAAACCCAACAAAGCGATTGTAGACTACAAAACAGAGATTACTGGTGTTTCTTCTCAAGATCTAGAGACAGCTACTTGCTCCTTAGCTAAGATACAGAAACGGATGAAGAAGTTGTTATCAGATGGAACCATATTAGTNGGACACAGTTTAAATAACGATCTACGTGTGCTGAAGCTAGATCATGTTAGAGTCATTGACACTTCATATATCTTCCAATCGGTGGATGGATCTATTAACAGGAGGCCTTCTTTAAATGGTTTATGTCAGGCAAGTAGCAAATTATTTACATTTTATGGTGCTGCTGTGTTAGGCTATGAGGTTCGGAAAATGGGTGCTCCACATGATTGTCGAGATGATGCATCTGCAGCAATGAAACTTGTTCTTGCAAGAATCAAACATGGTGTAGATAAAGCATTTCCAGTTACATTGGTTCAAGAGCATGTTTCAGATAGTGAGATGGCGAAGCTATTTGTTCACAGGATACCAACCACTGTGAACAGTGAAACACTACATGAGATTGTTCCTGGAGACTTCACAATAGAAGTAAAGCCTTCCAGGAANGGTCAAGGAGACAAGTATTCTGCCTTCGCTATATTTAAGAACCAACAAGATGCAAATGATGCCTATGAAACTGTCCAAGGCATCCAATCAAAGGATTCATATGGACGTCCACAGAAACTCGTCAAATCTCGGCTTAGTACGGGCATGACTGTCAGTCTATTTGTTCGGAAAATGGCAAGTGATGAACCCCATGAACCAATTCCATCCAAGAGAGCTTTAGAAGTGAATGAGGAAGTTGATGTTTCCAAGAGAGCAAAAATGGATCCTGAAGTTGATGTTTCCCGGACAGGCTCTAGTAATTGTGACTCTGACACCCACTTGAAAGAGATTGAAACACTGAATCAGCAATTGAAAGAAAGTAATTTGGAGATTGAATCGTTGAGGGAACAGTTGAGAAAAAAGGATTTTGAAATCTCCATGCTGCATAAAATGATATCCAACTTGAAAAAGCCAAAAAGGTAAAGAGGGTAGCCACGTCATTGAAATGGTTTTGGGTTATTTAGTCAATGAATTCAAGGACAGCCTACTTCTCAGGTGGTACCATGAGAAGTAAAACCATTGGCCATTTTGCCATTCAAATTTGGGAGTAAAAATTTGGCCCCGAGGGATGAGGAAGTGGAATGATGTATGTTATTCGTCAACAACCTCTGTAACATTACTCATCATTNCAATTTTGTTTGAGTAGGATTAGGATTCTGTCATGTGGTATCATGTTATTTTTTGAAATATTTTTCTATTGCTAATTAAGGGCCTTGTTTGACATTGTAGTTTTTGGTTAGGG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00108	50510	55642	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K14570	REX1, REXO1, RNH70	EC:3.1.-.-	Ribosome biogenesis in eukaryotes	map03008

Gene Ontology

molecular_function

GO:0000166 nucleotide binding

GO:0003676 nucleic acid binding

GO:0004527 exonuclease activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000108s00010410.1	PF00929.19	RNase_T	146	306	8.40E-12

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	10.937
SRR1783600	control	11.023
SRR1783602	moderate drought stress	11.773
SRR1811619	moderate drought stress	11.595

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	12.722
DRR006520	Root Summer glycyrrhizin high producing strain	12.587
DRR006521	Root Winter glycyrrhizin high producing strain	9.591
DRR006522	Root Winter glycyrrhizin high producing strain	9.628
DRR006523	Root Summer glycyrrhizin low producing strain	13.937
DRR006524	Root Summer glycyrrhizin low producing strain	14.133
DRR006525	Leaf Summer glycyrrhizin high producing strain	6.895
DRR006526	Leaf Summer glycyrrhizin high producing strain	6.961

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	25.051
SRR2868004	Drought Stress (root)	19.304
SRR2967015	Control (root)	16.405

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	7.927
SRR9715740	Leaf	14.813
SRR9715741	Leaf	8.857
SRR9715739	Root	1.153
SRR9715742	Root	9.624
SRR9715743	Root	8.149

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	83.621
SRR8749028	MeJA induced 9h	33.972
SRR8749029	MeJA induced 9h	40.915
SRR8749030	Uninduced	8.482
SRR8749031	Uninduced	7.015
SRR8749032	Uninduced	6.354

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	27.497
SRR8400027	Control - Root	22.541