Gene detail information of Glyur000108s00010408 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G27230.1 | 2.00E-169 | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein |
| NR | XP_003545042.1 | 0 | PREDICTED: uncharacterized protein LOC100786204 isoform 1 [Glycine max] |
| Swissprot | tr|Q0WT31|PMTP_ARATH | 9.00E-06 | Probable methyltransferase PMT25 |
| trEMBL | tr|I1MC57|I1MC57_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA14G40550.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00108 | 37344 | 38624 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000108s00010408.1 | PF03141.11 | Methyltransf_29 | 267 | 370 | 8.20E-07 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 37.915 |
| SRR1783600 | control | 38.665 |
| SRR1783602 | moderate drought stress | 15.345 |
| SRR1811619 | moderate drought stress | 15.220 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 15.915 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 15.592 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 7.046 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 6.808 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 19.947 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 20.334 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 5.537 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 5.173 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 34.695 |
| SRR2868004 | Drought Stress (root) | 22.469 |
| SRR2967015 | Control (root) | 22.075 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 7.819 |
| SRR9715740 | Leaf | 4.399 |
| SRR9715741 | Leaf | 4.138 |
| SRR9715739 | Root | 27.552 |
| SRR9715742 | Root | 30.567 |
| SRR9715743 | Root | 25.015 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 29.893 |
| SRR8749028 | MeJA induced 9h | 17.814 |
| SRR8749029 | MeJA induced 9h | 17.079 |
| SRR8749030 | Uninduced | 1.164 |
| SRR8749031 | Uninduced | 0.531 |
| SRR8749032 | Uninduced | 1.838 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 31.254 |
| SRR8400027 | Control - Root | 39.241 |