Gene detail

Gene detail information of Glyur000108s00010406

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G19850.1	9.00E-165	Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related
NR	XP_003544394.2	0	PREDICTED: auxin response factor 5-like [Glycine max]
Swissprot	tr\|P93024\|ARFE_ARATH	0	Auxin response factor 5
trEMBL	tr\|I1MC56\|I1MC56_SOYBN	0	Auxin response factor {ECO:0000256\|RuleBase:RU004561}

Sequence

Transcript Sequence

>Glyur000108s00010406.1
ATGCATTTTATGCTTCCTGTTTGAAGCAAAGAGAAAGAGAGAGAGAAAAGGGGTTTTGTTTTTTGTAGTTTTAGTATATTTTTTTGTTGGCATTGGTGATTGTGCTTGCTTCTTGTGAGAGAAGTTGGAAAGAAAAAAAAGAAACAGTATCAGCGTCAGTGTGATGATGATGAGAGGTTTCACTGAAAGGTTGGTTTCTTTTTGAAGAAAAGAAAGAGAAAACAAGAAAAAAAAACAAGTACTGAAACCAATAATAATAATAGAGGCCACTCACTCACACTCAACATGCTTGCTTTGTTCCGCGTGCTTTGATGCAAAACTGATGATGGGGTCTCTGCTTTGTTCAAAAAATTGACCCTTTTTCTTCGCAGGTTTTGTTCCTTTGTTCAAAGCCTTCTGCTTTTTCAGCTTTGCTTGGATTCTNTCTTTGTATTCTCTTTCGGACAACAAATGAAGATCATTCTCNTAAAGTTTTGTTCTTTTTCACTTCTCTAGCCAATGGGGTGGTGAGGTGATGGAGGAAGAGAAGGGGAAGGAGAATTATCATTATTATTATTATTATTATTCAGTGTTTGGTGTGTGAAGAATTGAAGGCGTAGAAACACGGGTTTCTCTTTTATGTTGTTGAAGAAGACGTAGAAAGGAATAGGAATAGGAATAGGATGGCTTCCGTAGCAGAAAAGATTATTAAAACTGGAGGAGGAATTGGAGTTGGAGTTGGAGTAGGAGGAGGACTAGTTGTTGGGGGTCAAACTCAAACTCAAACTCTTGTTGCTGAGATGAGATTGCTCAAGGAAATGCAGGAACATTGTGGGGTAAGAAAGACTTTAAATTCCGAGCTATGGCATGCTTGTGCTGGCCCTCTTGTATCTTTGCCTCAGGTTGGGGGTCTTGTGTATTACTTCCCTCAGGGACATAGTGAACAGGTTGCCGCTTCAACTAGAAGAACAGCAACCTCACAGATTCCAAACTACCCAAATCTTCCATCTCAGTTGTTGTGTCAAGTTCAAAACGTTACACTACATGCAGACAAGGAGACAGATGAAATCTATGCTCAAATGAGTCTCCAACCACTGAATTCTGAGAAAGAAGTGTTTCCTATATCTGAGTTTGGGGTAAAGCAAAGTAAACATCCCAGTGAGTTTTTCTGCAAGACTTTGACTGCTAGTGACACCAGCACACATGGTGGCTTTTCTGTTCCACGCAGGGCAGCAGAAAAGCTCTTCCCTCCATTGCCAAAGAGACACCTTCTCACAACTGGATGGAGTTTGTTTGTGGGGTCAAAAAGGCTTAGAGCAGGTGATTCTGTTCTTTTCATCAGGGATGAGAAATCGCAATTGCGAGTTGGTATCAGGCGTGCTAATCGTCAACAGACAACACTGCCATCATCAGTACTTTCTGCTGATAGCATGCACATTGGTGTGCTTGCTGCTGCAGCTCATGCTGCTGCTAATCGAAAATTTGTAATTCCACTGGCCAAATACAGAAAAGCTGTTTATGGGACCCAGCTCTCAGTTGGCATGAGATTTGGTATGATGTTTGAGACAGAGGAATCGGGTAAGCGCAGATACATGGGTACTATTGTTGGTATCAGTGATGTGGATCCTTTGAGGTGGCCTGGTTCTAAGTGGAGAAATATTCAGGTGGAGTGGGATGAGCCAGGGTGTGGTGATAAGCAGAATAGAGTTAGTGTATGGGAGATTGAGACTCCTGAAAGCCTTTTTATCTTTCCTTCAAGTCTAAAAAGGCCTTTACAATCTGGACTTTTGGAAAATGAGTGGGGAACTTTGTTAAGAAGACCTTTTATAAAAGCACCTGAAAATGGAACAATGGAGCTCTCAAACTCGATGGCGAATCTCTACCAAGAACACCTGATGAAAGTGCTTTATAAACCCCAAGTTATTAACAACAACAACGGCACCTTTTTATCCGTCATGCAACAAGAGTCTGCTGCTACAAGAGGACCCTTGCAAGAGATGAAGTCCACACTGGCAACAGAGAACCAAAAAGTTCATCTTTCAAGTACAGAGATTACTACTGATAAGCCAAAATTAGAATCTGAGGTGTTACCTGATCATCATATGTTTGACTACCCTTCCATGGAAGGCTGCAACATCGAAAAAGCAGCGGCCGCAAATCCTTCTCAGTTAGAATCATCAATAATATCACATCCTCAACTGATTGACATGGCACAATCTGATCCTTCTATTGTGAATGGCATGCTTCCTCAGCTAGACATTGATGAATGGATGGTGTATCCTTCTTGCCAACCAAATCTGCAAGATCATACCTCATTTCAACCTCAAGCAATGAACCCTTCTATACCTTCAATGAACCAAGAAGTGTGGGATCATTATGTCAAGAATAATTTGAAGGTTTTACCTCAAGGGGACCAGCTAACATCATCCATGTGTCATCAACCAGGGATGTATCATGGCCTCAATGGTATATCTAATTCAAACAACTTGAGGGATCTTTCAGCTGAAAGCAATAACCAAAGTGAAATTTGTGTCAATGTTGATGTTAGTAACAGTGTGAATACAACCACTACTACCATGGTTGATCCTTCTACTTCAAGTACTATTTTGGATGAGTTTTGCGCAGTGAAGGACAGAGATTTTCAGCATCCACAAGATTGCATGGTGGGAAACTTGAGTTCAAGCCAGGATGGACAGTCTCAGATAACCTCAGCAAGTTTAGCAGAGTCACGTGCCTTTTCGCTGCGAGACAACTCGGGCGGAACATCTTCAAGCCATGTTGATTTTGATGAAAGCAGCTTTCTGCAGAATAATAATAGTAATTCATGGCAGCAAGTAGCTGCACCCATCAGAACCTACACCAAGGTGCAAAAAGCAGGTTCTGTAGGAAGATCAATTGATGTGACTACTTTTAAGAACTATGAGGAGTTGATCCGTGCAATTGAATGCATGTTTGGACTCGATGGTCTGCTGAATGACACTAAAGGTTCCGGATGGAAATTAGTATACGTAGATTATGAGCATGATGTTCTACTTGTTGGGGATGATCCTTGGGAAATTCTATCACCTTCAGAAGTTCAGCAGATGAGTGAAGAGGGAATGAAGCTTCTAAATAGTGGAGCGTTGCAAGGGATCAATGACACTCATTTGGCAAGATTGGAGCATTGGTGGGTATGGACAAACCTTGAACGTAGAAGGACCGCCGTGTGCGACTCACCGCCGTCTCGGTTGCCTCCACCACGACGCCCCACCATGATCGTCAGCAGTGACTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00108	13295	20413	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006355 regulation of transcription, DNA-templated

GO:0009725 response to hormone

cellular_component
GO:0005634 nucleus

molecular_function

GO:0003677 DNA binding

GO:0046983 protein dimerization activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000108s00010406.1	PF06507.8	Auxin_resp	264	327	1.80E-22
Glyur000108s00010406.1	PF02309.11	AUX_IAA	700	792	4.20E-18

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	5.337
SRR1783600	control	5.579
SRR1783602	moderate drought stress	5.095
SRR1811619	moderate drought stress	5.305

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	5.543
DRR006520	Root Summer glycyrrhizin high producing strain	4.923
DRR006521	Root Winter glycyrrhizin high producing strain	0.334
DRR006522	Root Winter glycyrrhizin high producing strain	0.339
DRR006523	Root Summer glycyrrhizin low producing strain	5.170
DRR006524	Root Summer glycyrrhizin low producing strain	5.296
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.908
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.922

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	22.125
SRR2868004	Drought Stress (root)	23.866
SRR2967015	Control (root)	20.990

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.587
SRR9715740	Leaf	0.598
SRR9715741	Leaf	0.689
SRR9715739	Root	2.111
SRR9715742	Root	10.198
SRR9715743	Root	9.457

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	9.927
SRR8749028	MeJA induced 9h	3.149
SRR8749029	MeJA induced 9h	2.712
SRR8749030	Uninduced	2.001
SRR8749031	Uninduced	1.656
SRR8749032	Uninduced	2.033

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	37.634
SRR8400027	Control - Root	28.284