Gene detail

Gene detail information of Glyur000107s00007275

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G34930.1	8.00E-82	disease resistance family protein / LRR family protein
NR	KEH25999.1	0	receptor-like protein [Medicago truncatula]
COG	YP_004775215.1	4.00E-27	RHS repeat-associated core domain-containing protein [Cyclobacterium marinum DSM 745]
Swissprot	tr\|Q9FIZ3\|GSO2_ARATH	1.00E-68	LRR receptor-like serine/threonine-protein kinase GSO2 (Precursor)
trEMBL	tr\|A0A072U8A9\|A0A072U8A9_MEDTR	0	Receptor-like protein {ECO:0000313\|EMBL:KEH25999.1}

Sequence

Transcript Sequence

>Glyur000107s00007275.1
ATGCTCTATTGCAGATTTCTGGAGGCTTTGGAAAGTGAAGAGTTTCATGGGTCCTCTGGTGGAAGACGGGGCGTGTGGGTGGCTTTGGGCTATGCACCTTCATTCTCGGAAGTTAATTATGCCGAGTGGGAAGAAGGGTTCTGTTTTGTGCACCGGGGGAGGAATAGGGGAAAGAAAGGAGAAGAAGGGGTGGGAGAAGGAGATTTGAAGGGAGGATATTTCTGTCATTTCATTTTGAAAAAAATCCTAGTGTTGGTGCAAGGATCAACTAATGTGGGTGCTGAGAGCATCACCCCTACTAATATGCTAGCTCAGTCCAGCTCTCCACGGGCTACGAGCCAAACGTTTCTTGATCTCAGAGAAAATTCTTTAGAAGGAAGCATACCATCTCAACTTGGAAAGCTTTCGAACTTGCAGGAGCTTTATGTTGGAGGAGGATATACTGATGATGCTCTCAAACTTGACGATGGGAATCACAGTGGAGGTCAGTGGCTGTCTAATCTCACTTCTTTAACCCATCTTTCCTTGTGGGACATGCCTAATCTTAACAGTTCTCATAGATGGTTGCAAATGATTGGTAAGCTACCGAAACTAAGAGAACTAAGCTTGTATGGGTGTAGCCTTTCTGATAATTTTATCCGTTCATTGAGCCCTTCCAAGTTCAATTTTTCTACTTCCCTAATTTCCGTCCTTGATCTCTCTTCAAACAGCTTCTCATCATCCATGATATTCCAGTGGGTGTCAAACATCAGTTCCAACCTTGTTGAGCTTGACCTTTCTTATAACCTCTTGGAGGCTCCAACGTCAAATCATTTTTCCATTGATGAGATGATTAGTAAGCTTCCAAAATTGAGAGAACTAAGTTTATCTAATTGTAGCCTTTCAGATAATTTTCTTCTCTCTAAAACTACTTCCAAGTTCAATTTTTCTACTTCCCTTTCCATCCTTGATCTCTCTAGGAACAACTTCACGTCATCAACCTTGATATTCCAGTGGGTGTCAAACTTCAGTTCCAACCTTGTTGAGCTTCACCTTTCTAACAACCTCTTGGAGGCTCCCGCATCAAATGACTTTGGGATAGTGATGAATTCTCTTGAGCGGCTTGACCTCTCCTATAATAGACTCAAGGGTGGGGTTTCGAAATCCTTCATGAATATATGCACCTTACGTGCTTTAAACATGGAGGAAAACAATTTGACAGAAGACCTTCCCTCTATTCTTCGTAATTTGTCTGGTGGCTGCGTTAGAAACTCGCTACAAGAGTTGGATCTGAGTTCTAATAAAATCACTGGCTCTTTACCTGACCTTTCCATGTTCTCATCTCTGAAAACATTGGATCTTTATGACAATCAACTAAGTGGAAAGATACCAGAAGGTAGCAGCCTGCCGTCTCAGTTGGAGCTTTTGTCAATCAAATCAAACTCTTTAGAAGGGGGAATTCCAAAATCATTTGGGAATGCATGTGCATTGCGCTCATTGTATCTGTCCAATAACAATTTAAGTGACGAGCTTCCAGTGATAATCCATCACTTGTCGGGATGTGCTAGATACTCACTGCAAGTATTAGATCTAAGCATGAATCAAATCAACGGCACACTACCTGACCTCTCAATATTCTCATCTTTAAAAATATTATTTCTTTATGAAAATAGGCTAAATGGGAAGATACCTCAAGATATTCGATTTCCAACTCAATTGGAGGAACTTTATATGAGTTCAAACTCTTTGGATGGTGTGATCTCTGACTCCCATTTTGCTAATATGTCCAAGTTAGAGTCATTGGACTTGTCTGACAACTCACTGGCTTTGACATTTACCCAAAATTGGGTCCCACCTTTTCAATTGCGCGACATTGAATTAAAGTCTTGCAAACTTGGTCTTGCATTTCCCAAATGGTTGCAAACACAAGACAACTTTCAATACCTTGACATTTCTAATGCTGGAATATCGGATATTGTTCCAGAGTGGTTTTGGGCCAAACTAGCATTCCGAGAATGGATGGCGGTCAATATTTCACACAACAATCTCAAAGGCATAATTCCGAATTTTTCACCACCAGTAAAGAATCTTCAACATTTTTCTTTATCTCTCGCATCAAATCAATTTGAAGGCCCTATTCCACCATTTCTACGAGCTGGTGGTATGATATTTGATCTATCCAAAAATAAATTTTCAGACTCTCTTTCGTTCATATGTGCGAATGGTATAGATGAAACATTGTACCAACTAGACCTCTCAAATAACTGGTTGCACGGACAAATTCCAGATTGTTGGAGCCATCACAACTCATTAGCTTATTTAGACTTGAGTCACAATAATTTTTCAGGGAAGATTCCTACTTCAATGGGAGCACTTGTAGAGCTTCAAGCATTAATATTGAGAAACAACAGCATAACAGGGGAGATCCCTTTCTCCTTGATGAATTGCACAAAGCTAGTAATGTTGGATGCGGGAGAAAATAGATTATCAGGACACATCCCTTCATGGATTGGGAGCAAATTACAAGAGTTGCAAGTTTTAAGCTTAGGAAGGAATCACTTCTTCGGAAGCTTACCTTTAGAACTTTGTTATCTGAAAAGCATTCAAGTCTTGGATCTCTCATTGAACAATCTATCTGGACAGATTCCCAAATGCATCAAAAATTTTACTTCAATGGCTCAAAAGACTTCCTCAGGAGATTATCCAGGTCATTCATTTTTTGTCAACGCTACTGGTACTCTATCAGGAAATTGGTCTTACGATTTGAATGCATTCTTGATGTGGAAAGGGAAAGAACAAATGTTCAACAATAATGAGTTATTTCTTATAAAAAGCATTGATCTCTCCAGCAATCACTTCTCAGAGGAAATTCCAGCAGAAATAGAATATTTATTTGAATTGGTTTCTTTGAACTTATCAAGAAACGATTTGACGGGGAAAATTCCTTCAAATATTGGAAAGCTAACATCACTTGAATTTCTTGATTTGTCAAGAAACCATCTTACCCAAATTTATGGGATTGGTGTGTTAGATTTGTCACATAATCATTTATCTGGAAAAATTCCAACTAGCACACAGTTACAAAGTTTCAATGCCTCAAGTTATGAAGATAATCTTGATCTTTGTGGGCCACCACTTGAGAAATTGTGTGTTGAAGTGGAGTCACCACATGACCCAAAAGTTAAGATTCAGGAGGATGAGGATTTGCTTATCACTCGAGGATTTTACTTCAGTATGGCGTTTGGATTTGTTATTGGCTTCTGGGGGGTCTTTGGCTCAATCCTAGTGAAGCGTTCTTGGCGACATGCTTATTTCAAGTTCTTGAACAATGTAGTGGATAGCATTTATGTCATGGCAGTAGTGAAATTCGCAAAGTGCAAGAGATGGCTCAAAGACTAG

Protein Sequence

>Glyur000107s00007275.1
MLYCRFLEALESEEFHGSSGGRRGVWVALGYAPSFSEVNYAEWEEGFCFVHRGRNRGKKGEEGVGEGDLKGGYFCHFILKKILVLVQGSTNVGAESITPTNMLAQSSSPRATSQTFLDLRENSLEGSIPSQLGKLSNLQELYVGGGYTDDALKLDDGNHSGGQWLSNLTSLTHLSLWDMPNLNSSHRWLQMIGKLPKLRELSLYGCSLSDNFIRSLSPSKFNFSTSLISVLDLSSNSFSSSMIFQWVSNISSNLVELDLSYNLLEAPTSNHFSIDEMISKLPKLRELSLSNCSLSDNFLLSKTTSKFNFSTSLSILDLSRNNFTSSTLIFQWVSNFSSNLVELHLSNNLLEAPASNDFGIVMNSLERLDLSYNRLKGGVSKSFMNICTLRALNMEENNLTEDLPSILRNLSGGCVRNSLQELDLSSNKITGSLPDLSMFSSLKTLDLYDNQLSGKIPEGSSLPSQLELLSIKSNSLEGGIPKSFGNACALRSLYLSNNNLSDELPVIIHHLSGCARYSLQVLDLSMNQINGTLPDLSIFSSLKILFLYENRLNGKIPQDIRFPTQLEELYMSSNSLDGVISDSHFANMSKLESLDLSDNSLALTFTQNWVPPFQLRDIELKSCKLGLAFPKWLQTQDNFQYLDISNAGISDIVPEWFWAKLAFREWMAVNISHNNLKGIIPNFSPPVKNLQHFSLSLASNQFEGPIPPFLRAGGMIFDLSKNKFSDSLSFICANGIDETLYQLDLSNNWLHGQIPDCWSHHNSLAYLDLSHNNFSGKIPTSMGALVELQALILRNNSITGEIPFSLMNCTKLVMLDAGENRLSGHIPSWIGSKLQELQVLSLGRNHFFGSLPLELCYLKSIQVLDLSLNNLSGQIPKCIKNFTSMAQKTSSGDYPGHSFFVNATGTLSGNWSYDLNAFLMWKGKEQMFNNNELFLIKSIDLSSNHFSEEIPAEIEYLFELVSLNLSRNDLTGKIPSNIGKLTSLEFLDLSRNHLTQIYGIGVLDLSHNHLSGKIPTSTQLQSFNASSYEDNLDLCGPPLEKLCVEVESPHDPKVKIQEDEDLLITRGFYFSMAFGFVIGFWGVFGSILVKRSWRHAYFKFLNNVVDSIYVMAVVKFAKCKRWLKD

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00107	315909	324640	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000107s00007275.1	PF13516.1	LRR_6	195	217	2
Glyur000107s00007275.1	PF13516.1	LRR_6	281	299	0.82
Glyur000107s00007275.1	PF00560.28	LRR_1	364	383	1.3
Glyur000107s00007275.1	PF12799.2	LRR_4	418	453	4.80E-07
Glyur000107s00007275.1	PF00560.28	LRR_1	490	507	0.085
Glyur000107s00007275.1	PF00560.28	LRR_1	518	536	1.1
Glyur000107s00007275.1	PF13855.1	LRR_8	565	601	2.00E-06
Glyur000107s00007275.1	PF13855.1	LRR_8	739	798	5.50E-07
Glyur000107s00007275.1	PF13516.1	LRR_6	858	879	1.2
Glyur000107s00007275.1	PF00560.28	LRR_1	960	981	0.22
Glyur000107s00007275.1	PF13504.1	LRR_7	982	997	0.18

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.264
SRR1783600	control	0.330
SRR1783602	moderate drought stress	0.011
SRR1811619	moderate drought stress	0.017

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.230
DRR006520	Root Summer glycyrrhizin high producing strain	0.374
DRR006521	Root Winter glycyrrhizin high producing strain	0.074
DRR006522	Root Winter glycyrrhizin high producing strain	0.102
DRR006523	Root Summer glycyrrhizin low producing strain	0.198
DRR006524	Root Summer glycyrrhizin low producing strain	0.158
DRR006525	Leaf Summer glycyrrhizin high producing strain	30.904
DRR006526	Leaf Summer glycyrrhizin high producing strain	30.665

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.264
SRR2868004	Drought Stress (root)	0.394
SRR2967015	Control (root)	0.152

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.401
SRR9715740	Leaf	1.786
SRR9715741	Leaf	1.185
SRR9715739	Root	0.000
SRR9715742	Root	0.000
SRR9715743	Root	0.000

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.495
SRR8749028	MeJA induced 9h	0.419
SRR8749029	MeJA induced 9h	0.179
SRR8749030	Uninduced	0.089
SRR8749031	Uninduced	0.020
SRR8749032	Uninduced	0.072

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.018
SRR8400027	Control - Root	0.010