Gene detail

Gene detail information of Glyur000107s00007268

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G11950.2	9.00E-100	Putative lysine decarboxylase family protein
NR	KHN32200.1	6.71E-143	Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG8 [Glycine soja]
COG	YP_686619.1	7.00E-61	hypothetical protein RCIX2172 [Methanocella arvoryzae MRE50]
Swissprot	tr\|Q84MC2\|LOG8_ARATH	4.00E-126	Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG8
trEMBL	tr\|I1K8D8\|I1K8D8_SOYBN	3.00E-143	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA06G05560.1}

Sequence

Transcript Sequence

>Glyur000107s00007268.1
CGGAATTACCCTTTGGAGCAAGTTTCTGGCTTTTGCTGATAGCTCAAAAAGTTATTCAAAACAAAGCAACACANAATCTTCCTCTGCGTTAAGGGTTGCCATTCTCTCTTTATTCTATATATGCTCTCTGTTCTGTTTTTGTTCCTTCAATGGTTTTGGGTTTGAATTGAGAAACCACAAAGAAAGCATCGATTTTGAATGGAGGAAGGGCACCCTAGAAGCAAGTTCAAGAGACTCTGTGTCTTCTGTGGCAGCAACTCTGGCAACCGAGAAGTCTTCAGTGATGCTGCTATTCAATTGGGCAATGAACTTGTGAAGAGGAACATAGACTTGGTGTATGGTGGGGGAAGTTTTGGGCTAATGGGACTAATATCTCAGAGAGTGTATGATGGAGGCTGCCATGTCCTAGGGATCATTCCAAAAGCTCTCATGCCTCTCGAGATATCTGGTGAAACAGTGGGTGAAGTAAGAATAGTTTCAGATATGCATGAGCGTAAGGCTGCAATGGCTCGAGAAGCTGATGCATTTGTTGCTCTCCCTGGAGGATATGGAACCATGGAAGAGTTGTTGGAGATGATAACTTGGGCCCAACTTGGAATTCATAAGAAACCGGTTGGTCTGCTGAATGTTGATGGTTACTATAACAGTTTGCTTGCACTATTTGACAATGGTGTTCAAGAAGGCTTCATTAAGCCTGCTGCACGAAATATAGTTGTCTCTGCTCCGTCTGCAGAAGAACTTATGATGAAGATGGAGCACTACACTCCTTCGCGTGAACATGTCGCCCCTCATGAGACCTGGCAGATGAAGCAATTAGATAATTATCCAGGACAATAAAATGCAGAGTGAAACTTCCATTGATGAATATGTTTTTCTCCAGAATTGATTTCTGNTGTGATTCTGATAGAAACCAGTTCTGAATTGAAATGGAAATTTTATTGATTTCAAATATAGTACACTGTTCAGAAACAGATCCAGTGCCTAGTTCGGAGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00107	281638	284330	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000107s00007268.1	PF03641.9	Lysine_decarbox	55	185	4.20E-46

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.304
SRR1783600	control	2.230
SRR1783602	moderate drought stress	2.471
SRR1811619	moderate drought stress	2.493

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.949
DRR006520	Root Summer glycyrrhizin high producing strain	3.108
DRR006521	Root Winter glycyrrhizin high producing strain	3.953
DRR006522	Root Winter glycyrrhizin high producing strain	4.053
DRR006523	Root Summer glycyrrhizin low producing strain	7.453
DRR006524	Root Summer glycyrrhizin low producing strain	7.681
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.807
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.965

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	10.985
SRR2868004	Drought Stress (root)	11.148
SRR2967015	Control (root)	15.818

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.851
SRR9715740	Leaf	4.917
SRR9715741	Leaf	3.316
SRR9715739	Root	2.802
SRR9715742	Root	4.449
SRR9715743	Root	4.996

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.153
SRR8749028	MeJA induced 9h	0.392
SRR8749029	MeJA induced 9h	1.795
SRR8749030	Uninduced	1.351
SRR8749031	Uninduced	0.636
SRR8749032	Uninduced	0.988

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	9.868
SRR8400027	Control - Root	8.417