Gene detail

Gene detail information of Glyur000107s00007267

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G11960.1	6.00E-72	Protein of unknown function (DUF803)
NR	XP_003522263.1	2.35E-151	PREDICTED: NIPA-like protein 3-like isoform X1 [Glycine max]
Swissprot	tr\|Q8RWH8\|NIPA9_ARATH	7.00E-113	Probable magnesium transporter NIPA9
trEMBL	tr\|I1JTY2\|I1JTY2_SOYBN	9.00E-152	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA04G05560.1}

Sequence

Transcript Sequence

>Glyur000107s00007267.1
ATGTGGGAATCAATTATTTTGACGGTGGCTGCGACCGCCGGCAATAACATCGGAAAGATCCTTCAGAAGAAAGGCACAGTCATAAGGGCCTATGCTTTAAACAAAACATGGGCGATAGGTTTTCTAATGGATATATTTGGGGCATTATTGATGCTAAGGGCATTAGCTCTGGCTCCTGTCTCTGTTATCCAACCTGTTTCTGGCTGTGGACTGGCAATTCTTTCAATCTTTTCTCATTTTTATCTCAAGGAAGTCATGAATGCTGTTGATTGGGTGGNCATTACCTTGGCAGGTTTTGGNACAATAGGAGTGGGTGCTGGAGGCGAGGAGCAAGAGGCTGCTGCTCTTTCTATTTTTCACATACCATGGCTGGCATTTGTGATCATGCTTAATGGATGGCTTCGTATATGCAAACGTCAACGAAGAGAACAAGAGATGGATGGCATCTGTAATATCAAAGATGGGATTCCTATTCCTGGAACAAGGCTTCCACAAGCTGTTGGTTCCTGTATGCATCATCATGAGTGTGTGCTCAAGTGGTACAGGTTTTTACTACCAGATATGCTAACCTCCGTTGTATTTGTCTTCACCAACATGCAGACACGTGGTCTAAAGCATGGAAGGGCTATTGTAGTCTCTACATGTGCAGCCGTGGCATCGATTTTGACTGGTGTACTTGCTGGGATGCTTGCTTTGGGTGAGCGACTCCCTTCAGCCCCAAAAGCTCGTTTGTCACTTCTTCTTGGATGGCTACTTATTATTGTCGGGGTGATTTTGCTTGTTGGTTCAACAAGGATAGTGAGATTCCTCCGATTTTCTTCGCACCGCTTTAAAAGAAGCAGTGCCGATAAGAACTATGGCCCAAGAAGATCTGGGACTTCACGAATTAGGGAACCAGGCCCAACTGCTGTCATTCAAGCAGCAACCTTAAATCATTTACTATCATCATCTGCCAAAGAAAAAGCTTGATTTTACATGAGCTGGAAAATGGTCCTTCGTTCATTCATTCTCAGGATTCATACCTCCCAAAAAGAATGTTTTCAAGGCTAGATTGTTTGTGTGCAGTTGCTTCTTTATCAGAGGGCATGAATTTTTAGGGATCATTCCTTCTGGCTCGCATACTTTACATGAAAATCACTTCCAGTTTGTGTGCCACATTGTGTAAATTTTTCCTGAGCTTCCAATATTTCTCAAATTGTATATGAAGATGGGATAGTAACACATACGGAATGTTTGGGTAGCATAGAAACAACCTGCAGGCTGCAGTACAGAACACTTTTACTCCTAATTTCCTATGCTAGTGCANTAGCAATGTTCTGAGTACGATGCAAAAGGGCTATTCCATCTAGAAGGTTACACAACTCCTGTTGAAGGGAAATATTATGATCTTACACTGACAGGTGGATGNGAAAGAGTTTAGCTTAAGTTCAGTAATACCGTTATAGTATTGAGTTGCAAAGATGTGATTGTTTAAGTAGATGGTACTGGTCGATGATTTTGTTTAAAAGATGTATACAAGTAAAATGAATGAATTGCCTTCCTAACTACATTTTTTTTTTAGTTTTTGAAAAATTGTAGTTTTTGTTAATATCTACACGAGTTACATAATCCCTGGAATGAAATATGGGCATGCTTAGTGTCGTTGCATGAATTTACTTGACGTTTGCATAATTTGTGATTTTGTTGATGATACCTTTCTTCACCCAATTCTTCTGTTCTCATGGGGCTAGTTATCATCAGGTGAAAAGATAACTTGAAGTGATATCCTTGCTATAATTNCCGTAGCTGTTGTTTGCAGAAGATCAAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00107	272941	277616	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0015693 magnesium ion transport

cellular_component
GO:0016021 integral component of membrane

molecular_function
GO:0015095 magnesium ion transmembrane transporter activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000107s00007267.1	PF05653.9	Mg_trans_NIPA	18	102	2.50E-05

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	13.678
SRR1783600	control	13.794
SRR1783602	moderate drought stress	23.654
SRR1811619	moderate drought stress	23.260

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	12.289
DRR006520	Root Summer glycyrrhizin high producing strain	11.945
DRR006521	Root Winter glycyrrhizin high producing strain	32.165
DRR006522	Root Winter glycyrrhizin high producing strain	31.464
DRR006523	Root Summer glycyrrhizin low producing strain	13.526
DRR006524	Root Summer glycyrrhizin low producing strain	14.055
DRR006525	Leaf Summer glycyrrhizin high producing strain	4.865
DRR006526	Leaf Summer glycyrrhizin high producing strain	4.948

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	21.094
SRR2868004	Drought Stress (root)	24.984
SRR2967015	Control (root)	28.552

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	9.746
SRR9715740	Leaf	11.006
SRR9715741	Leaf	13.601
SRR9715739	Root	8.032
SRR9715742	Root	11.938
SRR9715743	Root	10.745

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	17.154
SRR8749028	MeJA induced 9h	19.217
SRR8749029	MeJA induced 9h	15.377
SRR8749030	Uninduced	24.154
SRR8749031	Uninduced	21.647
SRR8749032	Uninduced	31.317

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	27.005
SRR8400027	Control - Root	24.474